PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s737311g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 280aa    MW: 30473 Da    PI: 7.4545
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s737311g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.6e-171462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd  l ++v+++G+g +W + +++ g++R++k+c++rw++yl
  PDK_30s737311g001 14 RGPWSPEEDAVLRNYVEKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                       89*********************************************97 PP
2Myb_DNA-binding42.12e-1369111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T++Ed  +  + +q G++ W+ Ia++++ gRt++++k++w++
  PDK_30s737311g001  69 GGFTEQEDIAIFALYNQIGSR-WSVIASKLP-GRTDNDVKNYWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.491966IPR017930Myb domain
SuperFamilySSF466892.24E-2811109IPR009057Homeodomain-like
SMARTSM007176.4E-121364IPR001005SANT/Myb domain
PfamPF002491.2E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-241568IPR009057Homeodomain-like
CDDcd001673.54E-91662No hitNo description
PROSITE profilePS5129415.31867117IPR017930Myb domain
SMARTSM007178.0E-1367115IPR001005SANT/Myb domain
PfamPF002491.8E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2269117IPR009057Homeodomain-like
CDDcd001677.92E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAVLRNYVE KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEQEDIAIF ALYNQIGSRW SVIASKLPGR TDNDVKNYWN TKLKKKVMAG  120
QIGLPTTITS SSPSSSTSTA HIHHSPSPAP PPQPPLLPAI KTQAYSSGEQ RLDTNVDFTQ  180
KLYSEIAQFS TTGLMEQPDF GRSVSVSPSE DISAASSSSI TVDNSSSNGC VNWSTDGVGG  240
YDAFLSELGF GPTGDFFGGF GSQWRTEEVS PYYYSDLATM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799755.20.0transcription factor MYB63-like
TrEMBLA0A2H3YK750.0A0A2H3YK75_PHODC; transcription factor MYB63-like
STRINGXP_008799755.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-72myb domain protein 36