PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s736731g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 518aa    MW: 58894.3 Da    PI: 7.6316
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s736731g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08104126427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        ++C +f++ G+C +Gd+C+F+Hgp
  PDK_30s736731g001 104 VPCYYFQK-GHCLRGDKCPFMHGP 126
                        69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.4133662IPR000571Zinc finger, CCCH-type
SMARTSM003560.0783861IPR000571Zinc finger, CCCH-type
PfamPF146089.0E-54160No hitNo description
SuperFamilySSF902291.35E-6100125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.727100127IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6101126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-5105127IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5105126IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MNNDCSHSHW KDGIRFRLAG LGQGTECEYR HSEGARVNPR DCWYWLNGNC LNPRCTFRHP  60
PLDGLFGIPG TTSGLAPIPS QTVALTHVPA TNGPASYNLN KSNVPCYYFQ KGHCLRGDKC  120
PFMHGPQQTG NPVPQQVVKV STPPPDPVST IKKDSWGLKE CTSQQSMDEA KFDKLVEMPL  180
APVKPAAKSE NVPDNGFANK QTTLPYASED ELPSFQQSNV PVNGGIALGQ PRCHQSQSID  240
EHLQNGREAD ESLRESSPGF DVLVDNNVEE SDYFHDEGGF RRAPVQGGRN LNHVSDFDYH  300
HSDYEPLPSL ERDQYNGVFE YDSYGRLDNR YHQEQQRISC ERILDRASMP EKRMLQREKS  360
YHDIDGSDLR HRLLKRRRPD GSRSALSPDR CGKLDQRDNH ARHAHRGDRR IHMESSISSR  420
LQGRITLPAR SLPDRPTDLR SERDRDKRRH RGRSSPARSI NYQGRYHDKI KRRPHDDFSD  480
VRNVGDQPII REDADPLNFA GPKSLAELKD IEEVLQMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371376RLLKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008776702.10.0zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A2H3X1140.0A0A2H3X114_PHODC; zinc finger CCCH domain-containing protein 32-like
STRINGXP_008776702.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241