PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s736671g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB_related | ||||||||
Protein Properties | Length: 328aa MW: 34494.3 Da PI: 4.8347 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.1e-08 | 12 | 35 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia +++ gRt++++k++w+++l PDK_30s736671g001 12 WSLIAGHLP-GRTDNEIKNYWNSHL 35 *********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.726 | 1 | 39 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.79E-7 | 11 | 38 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.6E-12 | 12 | 35 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-6 | 12 | 35 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-6 | 12 | 35 | No hit | No description |
Pfam | PF06640 | 1.1E-5 | 52 | 171 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MADGNCGGEL WWSLIAGHLP GRTDNEIKNY WNSHLSRRVD SFQRLVGDGE VMTVDLSKLP 60 GGGKRRGGRT SRSAMRKNAV NGTTRRETNE KGISPPTSSA QAQSDEGRSM VLDPGQNQAS 120 CVTFEGLNQG ALDPNEDMVS GLLSPSPIES GLWGACSHEM EAILFGASED SSVGCGSHEE 180 RESGSSSEER EGGALVLHGD GDGGAMDLEE EGRGGGVIAQ GEEEVGFLPV KKVEVFRSIS 240 AVLRKKSCKA ALFVECISSD PQQRKQSNLR FTGSTILLKG IHAPDTLKWT GSLLPCASAM 300 IGPPGDKVAA DSGGPESSLS QDTSISCG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010921536.1 | 1e-101 | transcription factor MYB111 | ||||
TrEMBL | A0A2H3XNH4 | 9e-84 | A0A2H3XNH4_PHODC; myb-related protein P-like | ||||
STRING | XP_008786362.1 | 2e-84 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 5e-15 | myb domain protein 111 |