PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s735481g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | TCP | ||||||||
Protein Properties | Length: 350aa MW: 37910.9 Da PI: 9.5501 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.1 | 5.1e-41 | 16 | 159 | 1 | 131 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec....e 74 aag+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a +ai el+ + + + PDK_30s735481g001 16 AAGGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGFDQPSKAIEWLIKAAAAAINELPALdgtfpeapkphhpeE------LmdepD 101 6899*************************************************************998877654322220......234433 PP TCP 75 aesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmr 131 ae++ s +++++++ + +++ +s+ s++s+ s+l+l++ e r kar+rarer ++k PDK_30s735481g001 102 AEAEPSFSQQQQQHLSLSKSGCSSTSETSKGSVLSLSRsEIRVKARERARERAKDKED 159 33333333444445667777799999999**9******99************999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.8E-41 | 18 | 158 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.35 | 19 | 77 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.594 | 140 | 157 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MPWHHPSSRI FRVSRAAGGK DRHSKVYTAK GLRDRRVRLS VSTAIQFYDL QDRLGFDQPS 60 KAIEWLIKAA AAAINELPAL DGTFPEAPKP HHPEELMDEP DAEAEPSFSQ QQQQHLSLSK 120 SGCSSTSETS KGSVLSLSRS EIRVKARERA RERAKDKEDR DDGHVAVSHH QNVNPSLNSQ 180 TSFTELLTGS SSNGTAKQMR RLTTVTTTAD YFGQAGLFPQ AQKAQQLPSG FSSQAHFGNS 240 SPMGMDHLMP ASAVAAAAGD YNLNFPISSG LAGFNRGTLQ SNSQSQLPHH HLQRLSSPVD 300 GSNLSFFASA ASAAAATSTE NQFSAGFDGR LQLFYGDGYR HSDLKGKGKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-25 | 24 | 78 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-25 | 24 | 78 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008794502.1 | 0.0 | transcription factor PCF6 | ||||
Refseq | XP_017699124.1 | 0.0 | transcription factor PCF6 | ||||
Refseq | XP_026661783.1 | 0.0 | transcription factor PCF6 | ||||
TrEMBL | A0A2H3ZRV4 | 0.0 | A0A2H3ZRV4_PHODC; transcription factor PCF6 | ||||
STRING | XP_008794502.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |