PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s735141g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Nin-like

Protein Properties

Length: 799aa MW: 88129.5 Da PI: 7.4902

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s735141g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9.2e-29	433	484	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PDK_30s735141g001 433 AEKTISLEVLRQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKISKV 484 589**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.938	423	504	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-25	436	484	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.49E-18	704	789	No hit	No description
PROSITE profile	PS51745	16.824	704	786	IPR000270	PB1 domain
SMART	SM00666	3.2E-21	704	786	IPR000270	PB1 domain
Pfam	PF00564	3.6E-13	706	785	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.2E-22	706	785	No hit	No description
CDD	cd06407	2.44E-30	706	785	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence Send to blast
MFKARMSQAL RYLKDSTNQH LLVQVWAPVK NGNRYVLTTS GQPFVLDPHS VGLLHYRTVS 60 VTYMFSEYPR LSHALHYNVR GTLALPVFEP YDQSCIGVVE LIMTSQKINY AGEVDKVCKA 120 LEAVNLKSSE ILDHPNVQIC NEGRQAALAE ILETLTMVCE AHKLPLAQTW VPCRHRSILA 180 HGGGSKKSCS SFDGGCMGQV CMSTTDAAFH VIDAHMWGFR EACTEHHLQK GQGVAGRAFA 240 SRRSCFSKDI TQFSKIDYPL VHYARMFGLA CCFALCLQST RTGNDDYILE FFLPPDCKDT 300 GEQLALLQSM RTMMEKCLRS LKVITDVELQ GGSSLEVIDM LEIRNQKSEP KPIYIRSCEN 360 RLHAFPEWNL VEALNEMQKE KHSMPELSEQ HFLTDANDGK NSKIVVDSNS TGTPSSSLVN 420 KNNKPLERRR GKAEKTISLE VLRQYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK 480 ISKVNRSLSK LKGVIESVHG PGGFDLTSLT GSLPVSVGSI SWPTKLDNSK QSKGVKVLDP 540 HGEREKGSLM HKSADDEDHC KKFIAPQDSV HDCTGIQLGP GKPSHSSKSG KSSAEGSMNP 600 PISEGSCQGN PMNETHTGKH FASSIKEIGE NPAQDLNRFG GCSISDAIAV EPQPSLGEIL 660 IKDSGSSKDL KDLCTSTMDD CRDEHTLGPA SDPSELRTIQ DLRTATIKVS YKEDILRFRL 720 GCTAGIMVLK NEIAKRLKLE IGTFDIRYLD DDHEWVMLAC NADLEECMEI SRLSGGRVIR 780 LSVNDILPSL GSSCESSGG

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence Send to blast

MFKARMSQAL RYLKDSTNQH LLVQVWAPVK NGNRYVLTTS GQPFVLDPHS VGLLHYRTVS  60
VTYMFSEYPR LSHALHYNVR GTLALPVFEP YDQSCIGVVE LIMTSQKINY AGEVDKVCKA  120
LEAVNLKSSE ILDHPNVQIC NEGRQAALAE ILETLTMVCE AHKLPLAQTW VPCRHRSILA  180
HGGGSKKSCS SFDGGCMGQV CMSTTDAAFH VIDAHMWGFR EACTEHHLQK GQGVAGRAFA  240
SRRSCFSKDI TQFSKIDYPL VHYARMFGLA CCFALCLQST RTGNDDYILE FFLPPDCKDT  300
GEQLALLQSM RTMMEKCLRS LKVITDVELQ GGSSLEVIDM LEIRNQKSEP KPIYIRSCEN  360
RLHAFPEWNL VEALNEMQKE KHSMPELSEQ HFLTDANDGK NSKIVVDSNS TGTPSSSLVN  420
KNNKPLERRR GKAEKTISLE VLRQYFAGSL KDAAKSLGVC PTTMKRICRQ HGISRWPSRK  480
ISKVNRSLSK LKGVIESVHG PGGFDLTSLT GSLPVSVGSI SWPTKLDNSK QSKGVKVLDP  540
HGEREKGSLM HKSADDEDHC KKFIAPQDSV HDCTGIQLGP GKPSHSSKSG KSSAEGSMNP  600
PISEGSCQGN PMNETHTGKH FASSIKEIGE NPAQDLNRFG GCSISDAIAV EPQPSLGEIL  660
IKDSGSSKDL KDLCTSTMDD CRDEHTLGPA SDPSELRTIQ DLRTATIKVS YKEDILRFRL  720
GCTAGIMVLK NEIAKRLKLE IGTFDIRYLD DDHEWVMLAC NADLEECMEI SRLSGGRVIR  780
LSVNDILPSL GSSCESSGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008783157.1	0.0	protein NLP3-like isoform X1
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2H3XFV6	0.0	A0A2H3XFV6_PHODC; protein NLP3-like isoform X1
STRING	XP_008783157.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7