PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s734231g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family G2-like
Protein Properties Length: 255aa    MW: 28029.4 Da    PI: 10.0742
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s734231g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.84.3e-32126179255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  PDK_30s734231g001 126 PRMRWTSTLHSHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 179
                        9****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-16123180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28124180IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-24126179IPR006447Myb domain, plants
PfamPF002494.0E-7127178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MTTGTTSTAS GFTAFPDLSL QISPPAISIN ESMRRAFFWD YNSMSDSGSS GSDMSHDQGF  60
LHSEGVQDPG HGEPTLSLGF KTAASDPLHH QLYHNLHHHH HHHSHHPQIY GFKRKLHGGK  120
RSIRAPRMRW TSTLHSHFVH AVELLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV  180
KSTDRGAGRG QTDMGMNQRT GGMGEVEGGL SCDRAGISPF YSLSAPTPPT PLPKSPRSVH  240
FLSFSPTTTS IKRNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16127181458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16127181458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16127181357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16127181357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16127181357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16127181357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16127181458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16127181458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16127181458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16127181458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16127181458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16127181458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813185.11e-175probable transcription factor KAN4
SwissprotQ9FJV52e-44KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A2H3ZFU41e-173A0A2H3ZFU4_PHODC; probable transcription factor KAN4
STRINGXP_008813185.11e-174(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.28e-45G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]