PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s733601g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C3H | ||||||||
Protein Properties | Length: 526aa MW: 58388.9 Da PI: 8.4315 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.5 | 6.2e-10 | 152 | 172 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 rff++tGtCk+G++Ck++H++ PDK_30s733601g002 152 RFFLKTGTCKFGATCKYHHPQ 172 79*****************97 PP | |||||||
2 | zf-CCCH | 36.3 | 9.3e-12 | 194 | 217 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ PDK_30s733601g002 194 KSCPYYMRTGLCKFGIACKFNHPQ 217 56********************97 PP | |||||||
3 | zf-CCCH | 39.1 | 1.2e-12 | 365 | 390 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG CkyG +Ck++H++ PDK_30s733601g002 365 DQPECQYYMKTGSCKYGTSCKYHHPK 390 689*********************96 PP | |||||||
4 | zf-CCCH | 34.6 | 3.1e-11 | 409 | 435 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++ +G CkyG++CkF H++ PDK_30s733601g002 409 PGQPVCTFYSMYGSCKYGSTCKFDHPF 435 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.038 | 150 | 172 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.6E-4 | 152 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.244 | 152 | 173 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-7 | 152 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 189 | 218 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.061 | 190 | 218 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-5 | 192 | 217 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-9 | 193 | 217 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-4 | 195 | 216 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-6 | 363 | 390 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.986 | 363 | 391 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-10 | 365 | 390 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 366 | 392 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 369 | 391 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.23E-5 | 407 | 434 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.474 | 408 | 436 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-6 | 408 | 435 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-8 | 410 | 435 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 413 | 433 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MVTTTSITTT IITIRITITT TTTTTIATTI TIKGVNASRR LRSEGGMKFS KAKEKGERGA 60 RVIIVVVLIV EVMVVVVVVV VVTVLIVLVV VGVWVTRGQE GDCCGDGVDF GGDGGGGSNG 120 CGDEGAYGDG DGLLRDFLRM GRLMCHKGKL ERFFLKTGTC KFGATCKYHH PQDKHEPRPV 180 QLNILGLPMR KDEKSCPYYM RTGLCKFGIA CKFNHPQPTS HAAMLPNVDI KVLLYDYNLC 240 FLYSERFRCI IGVMLDFVLE LPSASGKEWH KISNKMTNKI CNKKSYLMIT KPIRTNIEGL 300 DAKNMNEWMA DECERRYMQV LETLSKGGIN NVASTNVVGS TQISNPKHHA QSGSSAPVNF 360 PERPDQPECQ YYMKTGSCKY GTSCKYHHPK ERNQVAMCTI GPLGLPLRPG QPVCTFYSMY 420 GSCKYGSTCK FDHPFMGYYN YTLPAFSIPG APDHSVLFPD PRNSQAVWMS SEDSPSKTMR 480 LPDQHVKSET SEEPQDSNDY NHGNHSSQTS PSHIARHSEF PEKYSD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008803512.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
TrEMBL | A0A2H3YTC1 | 0.0 | A0A2H3YTC1_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
STRING | XP_008803512.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 8e-48 | C3H family protein |