PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s733601g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C3H | ||||||||
Protein Properties | Length: 178aa MW: 20237.8 Da PI: 3.5662 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 50 | 75 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++C+++H+ PDK_30s733601g001 50 PGEPDCIYYLRTGLCGYGSNCRYNHP 75 5789*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.441 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.81E-6 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 55 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MPDTMPVLSN AAADSSDACQ DNLEEAMWQL KVEDRKVGDD ARLNPYPDRP GEPDCIYYLR 60 TGLCGYGSNC RYNHPTYIRQ GRRRGGEPPE RDGQPDCQDD NDNNNDDDDD DDDDDVDDHD 120 DDDNDNNNND NDDNNDDDND DYDDDDDDDD YDDDDAVQLV LKFVMNFCPT KKCLLGTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008803512.1 | 4e-66 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q94AD9 | 1e-20 | C3H3_ARATH; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A2H3YTC1 | 8e-65 | A0A2H3YTC1_PHODC; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
STRING | XP_008803512.1 | 1e-65 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25763 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 6e-20 | C3H family protein |
Publications ? help Back to Top | |||
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