PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s732841g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 318aa    MW: 37052.7 Da    PI: 6.3424
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s732841g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.81.9e-18753148
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                       +ppGfrFhPtdeelv++yL+kk+++kk++l +vik+vd+y++ePwdL+
  PDK_30s732841g001  7 VPPGFRFHPTDEELVNYYLRKKMASKKIDL-DVIKDVDLYRIEPWDLQ 53
                       69****************************.9***************7 PP
2NAM54.24.8e-17539784129
                NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        +atg+dk+++s k++l+g++ktLvfy+grap+g+k+dW+mheyrle
  PDK_30s732841g001  53 QATGRDKPIYS-KHNLIGMRKTLVFYQGRAPNGQKSDWIMHEYRLE 97 
                        58*********.899*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.6471117IPR003441NAC domain
SuperFamilySSF1019419.02E-425117IPR003441NAC domain
PfamPF023653.0E-17896IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDTFSHVPPG FRFHPTDEEL VNYYLRKKMA SKKIDLDVIK DVDLYRIEPW DLQATGRDKP  60
IYSKHNLIGM RKTLVFYQGR APNGQKSDWI MHEYRLETNE NAPPQEEGWV VCRVFKKRMP  120
TVRRASELES PCWYDDQVSI MQDQLDFPNR IAIQPNMTYH QHLQSYKGET KMHYHLPHEP  180
FHQLPQLESP KLPNYINHGS SFHCFTTSED KTVQPSHQLQ MITFYKCFTT SEDKTVQPSH  240
QLQMITFYNS GGDIDQAVEQ VTDWRVLDKF VASQLSHDVS KGPEYSDAAE ILQVSDKQEV  300
AVEYASTSTS SCQIDLLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-29611814169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026661882.10.0NAC domain-containing protein 7
SwissprotQ9FWX23e-95NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A3Q0I8Y80.0A0A3Q0I8Y8_PHODC; NAC domain-containing protein 7
STRINGXP_008794847.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.18e-88NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]