PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s732171g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 315aa    MW: 34182.4 Da    PI: 7.6927
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s732171g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.6e-13846847
                       HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       Ed ll ++vk++G ++W++Iar ++ gR++k+c++rw + 
  PDK_30s732171g005  8 EDALLGNLVKKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 46
                       899999*******************.***********985 PP
2Myb_DNA-binding56.47e-185397147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       r+++T+eEd +++ a++ +G++ W++Iar +  gRt++ +k++w++ 
  PDK_30s732171g005 53 RKPFTEEEDRIIIAAHAIHGNK-WASIARLLD-GRTDNAIKNHWNST 97
                       789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.847147IPR017930Myb domain
SMARTSM007171.1E-5449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-22854IPR009057Homeodomain-like
PfamPF002499.8E-12846IPR001005SANT/Myb domain
CDDcd001672.93E-11845No hitNo description
SuperFamilySSF466898.61E-2626101IPR009057Homeodomain-like
PROSITE profilePS5129426.5548102IPR017930Myb domain
SMARTSM007179.4E-1752100IPR001005SANT/Myb domain
PfamPF002493.9E-155397IPR001005SANT/Myb domain
CDDcd001674.12E-135598No hitNo description
Gene3DG3DSA:1.10.10.604.3E-2355101IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAEPRSPEDA LLGNLVKKFG ARNWSLIARG IPGRSGKSCR LRWCNQLDPY VKRKPFTEEE  60
DRIIIAAHAI HGNKWASIAR LLDGRTDNAI KNHWNSTLRR RCFQAEQYKA ATCDAVQDAS  120
AEKAKESSEG SPSIGDVNSF KSLEGRDINS RGNMSDNSEN IVQVRDGPSE VKDPPYLFRP  180
VARVSAFRPY NHAFDLSSGS LVSGPVQLHG LLSQAFQAGS GVCKLLDGNC SEPQVPPQCG  240
HGCCSIQNDG HPRNSLLGPE FVEFVELPPI SNQELFSVAS DLSSIAWLKS GLQVSSSCIY  300
SGSPGQIAPP GGHVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-35810214108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785463.10.0transcription factor MYB1-like
TrEMBLA0A2H3XLM90.0A0A2H3XLM9_PHODC; transcription factor MYB1-like
STRINGXP_008785463.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.18e-82myb domain protein 109