PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s731301g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 310aa    MW: 35238.6 Da    PI: 6.681
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s731301g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.41e-51181451128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yL++k++ + l++  +i+evd+yk++PwdLp k+  ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v
  PDK_30s731301g004  18 LPPGFRFHPTDEELVVHYLCRKIACQCLPV-PIIAEVDLYKYDPWDLPGKAFFGQKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPV 108
                        79****************************.88***************7777799************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +   +g+  g+kk Lvfy+g+apkg ktdW+mheyrl
  PDK_30s731301g004 109 TPPgSGRPLGIKKALVFYHGKAPKGIKTDWIMHEYRL 145
                        *9978889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-6414171IPR003441NAC domain
PROSITE profilePS5100560.95318171IPR003441NAC domain
PfamPF023651.5E-2619145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMMGTTGRRR DAEAELNLPP GFRFHPTDEE LVVHYLCRKI ACQCLPVPII AEVDLYKYDP  60
WDLPGKAFFG QKEWYFFTPR DRKYPNGSRP NRAAGRGYWK ATGADKPVTP PGSGRPLGIK  120
KALVFYHGKA PKGIKTDWIM HEYRLADTNR AANKKNSLRL DDWVLCRLYN KKNVWEKMRR  180
QKEEEGSSGE MTDSMEAHDD TASDSFRNPE SDIENEVFPD FDSLGKIGAQ PYQASDGVQA  240
MRTGTTGSFR TIERPKEDSD WFTDLNLEDL QGSLAAFGAT PAMDMSNQDY YFSTIGSPYL  300
KPSQTNMPPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-9481775174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0035510.0JN003551.1 Elaeis guineensis clone Eg-C4-352 NAC protein 1 (NAC) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782755.10.0NAC domain-containing protein 68-like
SwissprotQ52QH41e-119NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A2H3XF690.0A0A2H3XF69_PHODC; NAC domain-containing protein 68-like
STRINGXP_008782755.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-91NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]