PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s730471g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 299aa MW: 33310.4 Da PI: 8.3893 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 9.7e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++ +++G+g +W + +++ g++R++k+c++rw++yl PDK_30s730471g002 14 KGPWSPEEDRQLKEYMEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41.3 | 3.5e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T +Ed + ++ + G++ W+ Ia++++ gRt++++k++w++ PDK_30s730471g002 69 GDFTDDEDRTICNLYASIGSR-WSVIASHLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.245 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.9E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.01E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.77 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.63E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDRQLKEYME KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FTDDEDRTIC NLYASIGSRW SVIASHLPGR TDNDIKNYWN TKLKKKLLGF 120 PPSQRKPYQQ QQQQHLFPSN LDIGSVSFSS PPSLEDMQIS QYLLNPIATP TFSSSLPQAS 180 KHQFRVKDNR SLLMFGTEQS CSSSDGSCNQ ISCGSNVDYE LYNGGQQLGS LDSFLHCGTQ 240 GTEKLLLGGG GGSSECNIEE IKPLVSPINW YNSPFGDDLN GAATKDVSLK TQGRATYYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-27 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008800556.1 | 0.0 | transcription factor MYB36-like | ||||
TrEMBL | A0A2H3YLH3 | 0.0 | A0A2H3YLH3_PHODC; transcription factor MYB36-like | ||||
STRING | XP_008800556.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 2e-74 | myb domain protein 36 |