PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s729201g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB_related | ||||||||
Protein Properties | Length: 127aa MW: 14366.3 Da PI: 4.7475 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.9 | 4.7e-08 | 14 | 46 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32 +g+W++eEd +l+++ +++G+g +W + +++ g PDK_30s729201g003 14 KGPWSPEEDRQLKEYMEKYGTGgNWIALPHKAG 46 79***********************88887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-10 | 5 | 41 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.504 | 9 | 58 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.74E-6 | 11 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.6E-7 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-4 | 16 | 44 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MGRAPCCDKA IVKKGPWSPE EDRQLKEYME KYGTGGNWIA LPHKAGVLFG WFFEQMRSLE 60 SFLYGGMEET QKLFLGDGEA SLEYNIEEIK PLVGPNSWCN SLFGDDLSSA TTKDISFKPP 120 GKAMYYY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008789582.1 | 2e-43 | transcription repressor MYB6-like | ||||
TrEMBL | A0A2H3XW60 | 5e-42 | A0A2H3XW60_PHODC; transcription repressor MYB6-like | ||||
STRING | XP_008789582.1 | 8e-43 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-24 | MYB family protein |