PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s729041g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 216aa    MW: 23914.3 Da    PI: 8.3071
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s729041g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.58.2e-241563149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       krie++  rqvtfskRrng++KKA+ELS+LC+a+v ++++s+ g+ y +
  PDK_30s729041g004 15 KRIEDEQTRQVTFSKRRNGLFKKASELSTLCGAQVGILVYSPGGRPYSF 63
                       79*****************************************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.347767IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-35766IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-28880IPR002100Transcription factor, MADS-box
CDDcd002652.62E-36880No hitNo description
PRINTSPR004047.6E-22929IPR002100Transcription factor, MADS-box
PfamPF003191.6E-261663IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-222944IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-224465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVRRTSTGRR KIEIKRIEDE QTRQVTFSKR RNGLFKKASE LSTLCGAQVG ILVYSPGGRP  60
YSFGQPGFEE VSNRFIPHNS MMTSPNPIGG AQDNVVEQQL NCRCMEITSR LEAAKTEGAM  120
LKERLEIAPK GKEQALETDL EGFSMEELEM LVSSYMDLKL RADSRAYKIM SGGASSVGGP  180
LPVNPVTMVN TCVSNEFQAQ YPTGGFMAYG WPHGFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-159711880PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-159711880PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785760.11e-161agamous-like MADS-box protein AGL29
TrEMBLA0A2H3XLW51e-160A0A2H3XLW5_PHODC; agamous-like MADS-box protein AGL29
STRINGXP_008785760.11e-161(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-31AGAMOUS-like 29