PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s727901g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 143aa MW: 16221.1 Da PI: 7.5963 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.8 | 2e-16 | 23 | 64 | 3 | 48 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 y GVr+++ +gr++AeIr p++ + r++lg+f+taeeAa a++ PDK_30s727901g001 23 YLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAALAYDL 64 88******.**********865...5******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.205 | 22 | 80 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-24 | 22 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-25 | 22 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.82E-24 | 23 | 79 | No hit | No description |
Pfam | PF00847 | 6.3E-10 | 23 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 23 | 80 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.1E-9 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-9 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MADLPQVILH RNRRRRSRAS TEYLGVRRRP WGRYAAEIRN PYTKERHWLG TFDTAEEAAL 60 AYDLSSIAFS GLARARTNFY YPFFAPPSPP PPPPPPPPSP LPEERDDCYF ESGSTEDDDS 120 MTIAAILQSF RHSSALSSSS LLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 22 | 79 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 17 | RNRRRRSR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008809528.1 | 2e-99 | ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q3E703 | 3e-27 | ERF88_ARATH; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | A0A2H3Z854 | 4e-98 | A0A2H3Z854_PHODC; ethylene-responsive transcription factor LEP-like | ||||
STRING | XP_008809528.1 | 7e-99 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 1e-28 | ERF family protein |