PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s724861g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 390aa    MW: 42734.3 Da    PI: 5.0087
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s724861g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  PDK_30s724861g001 14 KGPWTPEEDQKLLACIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61
                       79********************************************97 PP
2Myb_DNA-binding51.81.8e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  PDK_30s724861g001  67 RGKFSMQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.363961IPR017930Myb domain
SuperFamilySSF466892.02E-3011108IPR009057Homeodomain-like
SMARTSM007172.6E-141363IPR001005SANT/Myb domain
PfamPF002491.9E-161461IPR001005SANT/Myb domain
CDDcd001671.42E-111661No hitNo description
PROSITE profilePS5129425.53662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2665116IPR009057Homeodomain-like
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002498.1E-1667112IPR001005SANT/Myb domain
CDDcd001675.66E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRSPCCEKE GLKKGPWTPE EDQKLLACIE EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SMQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKS DALSSCDGQP RSAANLSHMA QWESARLEAE ARLRLVRESR LRATPPFQPQ  180
SPSSSAPPPP PPPPGSDSVA PPAPPLDALR AWQGAWSSKP TTGNPGGRID LESPTSTGSF  240
SENALPIASS GVMDANSTTC HEGPGQELEE EQDLEWKCFE RQPLRMPDTK DHRMDSFASF  300
SMDTTSIFGG DSSSWLPESS GGEFDAGFPG MLENSDDRNS SDGCGDSNYN AEGGSCAEED  360
GEEGDEDENY WNRILNLVNS ASPSSSPPMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802568.10.0transcription factor MYB106-like
SwissprotQ9LE631e-113MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2H3YQZ00.0A0A2H3YQZ0_PHODC; transcription factor MYB106-like
STRINGXP_008802568.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.14e-94myb domain protein 106