PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s724621g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

TCP

Protein Properties

Length: 360aa MW: 38382.2 Da PI: 6.7243

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s724621g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.5	1.4e-35	33	119	2	82
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.eaesssssa 82 +g+kdrhsk++T++g RdRRvRlsa++a++f+d+qd+LG+d++sk+++WLl+ akp+i+el+++ ++ss++ + s++ PDK_30s724621g005 33 TGRKDRHSKVCTAKGTRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLLEHAKPSIDELAELprwhpptTTSSSNPSpP--SNQHDL 119 79**************************************************************88777753333322221..111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-32	33	138	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.048	35	93	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGSSFNTLKL KSYHMGAAGE VVEVSGGHIV RSTGRKDRHS KVCTAKGTRD RRVRLSAHTA 60 IQFYDVQDRL GYDRPSKAVD WLLEHAKPSI DELAELPRWH PPTTTSSSNP SPPSNQHDLH 120 EQPVPTEPAA DQGAYSGATF LPPLNSDSIA DTIKTFFPMA TTTASSSYQN YPPDLVSRSS 180 NQAQDLRLSL QSLQDPMFHQ NQTPAASSQQ NFLSGNLAFG SASASWPEQN QRVVAWNVAQ 240 TGDGGGGGGD GAYGSNMPPP QAVPLHPALS LSQLFSQRGT LQSSNSPPVR SWMDPIAAAA 300 GHQIHPAGIH SSWPSVTATG FIFSDGGGFS GFHIPAWIQG EEEHGGISSK PPSDSSASNH

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGSSFNTLKL KSYHMGAAGE VVEVSGGHIV RSTGRKDRHS KVCTAKGTRD RRVRLSAHTA  60
IQFYDVQDRL GYDRPSKAVD WLLEHAKPSI DELAELPRWH PPTTTSSSNP SPPSNQHDLH  120
EQPVPTEPAA DQGAYSGATF LPPLNSDSIA DTIKTFFPMA TTTASSSYQN YPPDLVSRSS  180
NQAQDLRLSL QSLQDPMFHQ NQTPAASSQQ NFLSGNLAFG SASASWPEQN QRVVAWNVAQ  240
TGDGGGGGGD GAYGSNMPPP QAVPLHPALS LSQLFSQRGT LQSSNSPPVR SWMDPIAAAA  300
GHQIHPAGIH SSWPSVTATG FIFSDGGGFS GFHIPAWIQG EEEHGGISSK PPSDSSASNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	5e-20	40	93	1	54	Putative transcription factor PCF6
5zkt_B	5e-20	40	93	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00009	PBM	Transfer from 929286	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017698905.1	0.0	transcription factor PCF5-like
Swissprot	Q9MAH8	6e-84	TCP3_ARATH; Transcription factor TCP3
TrEMBL	A0A2H3ZR62	0.0	A0A2H3ZR62_PHODC; transcription factor PCF5-like
STRING	XP_008793159.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5839	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	6e-59	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Publications ? help Back to Top
Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]