PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s722661g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 296aa    MW: 33009 Da    PI: 7.6523
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s722661g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.2e-52111401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                        lppGfrFhP+d+el+++yL+ kv+g++   +    ++ +vd++k+ePwdLp+++  + kewyfFs rd+kyatg+r+nrat  gyWkatgkd
  PDK_30s722661g001  11 LPPGFRFHPRDDELICDYLATKVAGDRnwsFCGGPTMVDVDLNKCEPWDLPEMACVGGKEWYFFSLRDRKYATGQRTNRATLMGYWKATGKD 102
                        79***********************996542222469**************7667799********************************** PP

                NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++v + k  +vg++ktLvfy+grapkg+ktdWvmhe+r+
  PDK_30s722661g001 103 RPVAR-KAVQVGMRKTLVFYQGRAPKGKKTDWVMHEFRM 140
                        ****9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-594163IPR003441NAC domain
PROSITE profilePS5100554.20111163IPR003441NAC domain
PfamPF023653.5E-2612140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSCLSMVEAK LPPGFRFHPR DDELICDYLA TKVAGDRNWS FCGGPTMVDV DLNKCEPWDL  60
PEMACVGGKE WYFFSLRDRK YATGQRTNRA TLMGYWKATG KDRPVARKAV QVGMRKTLVF  120
YQGRAPKGKK TDWVMHEFRM EGPNDLPKLP FKEDWVLCKV FCKHREISSK PSIEASYLDS  180
GSSSLPPLMD TYITLDQAPQ NFEGFEQVPC FSSLPPSHTY QPPNPLLAPP LPPMERNLPL  240
TKGLAQLGDL PDLGSCVTPL SSDRKAIKAG EVLPTLAEGS LGGYFSDMVS GWLAGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-50716611171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811831.10.0NAC domain-containing protein 21/22-like
SwissprotQ84TE65e-90NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2H3ZCN10.0A0A2H3ZCN1_PHODC; NAC domain-containing protein 21/22-like
STRINGXP_008811831.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.24e-92NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]