PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s722281g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 358aa    MW: 40503 Da    PI: 6.705
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s722281g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-091201571954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  LA+++gLt +qV++WF N R +
  PDK_30s722281g001 120 FEHflHPYPKDSEKLMLARQTGLTRSQVSNWFINARVR 157
                        664459******************************88 PP
2BELL96.22.7e-311541972
               BELL 19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                       Vd+rYkqy++q+q+v+ssF++ ag g+akpYt+lAl++iSrhFrcL+dai++qi
  PDK_30s722281g001  1 VDRRYKQYYHQMQIVVSSFDVFAGSGAAKPYTALALQTISRHFRCLRDAISGQI 54
                       89***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075264.3E-26151IPR006563POX domain
SMARTSM005746.1E-5152IPR006563POX domain
PROSITE profilePS5007112.35798161IPR001356Homeobox domain
CDDcd000862.10E-12101162No hitNo description
SMARTSM003895.5E-10101165IPR001356Homeobox domain
SuperFamilySSF466896.42E-18102168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-29104167IPR009057Homeodomain-like
PfamPF059208.0E-18118157IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
VDRRYKQYYH QMQIVVSSFD VFAGSGAAKP YTALALQTIS RHFRCLRDAI SGQIRATRKS  60
LGEQDSSISK GGGISRLRYI DHQLRQQRAM QQFGMMQQHA WRPQRGLPES SVSVLRAWLF  120
EHFLHPYPKD SEKLMLARQT GLTRSQVSNW FINARVRLWK PMIEEMYREE IGDAEIDSNS  180
SSENPPIHKD EIRSSENEED LQSPPGERCQ INQLNDSKSK AIHNMDTGGA SASFRDKTSS  240
DDAYMNLKLN EQRPNGNDCS LLQDAFTHSE GSGRYMAYQT AEFGQYGNSD VSLTLGLQHC  300
DGSLPVSNGP QNFLAMRGED IYGAAAPIGA DTTDYDYMSM DDRRHRFGSS HLLHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17107164158Homeobox protein Meis1
4xrs_B4e-17107164158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812787.10.0BEL1-like homeodomain protein 7
RefseqXP_008812790.10.0BEL1-like homeodomain protein 7
RefseqXP_026655966.10.0BEL1-like homeodomain protein 7
RefseqXP_026655967.10.0BEL1-like homeodomain protein 7
SwissprotQ9SIW11e-115BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A2H3ZFQ40.0A0A2H3ZFQ4_PHODC; BEL1-like homeodomain protein 7
STRINGXP_008812787.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-114BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]