PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s722171g012
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 265aa    MW: 29749.4 Da    PI: 7.1653
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s722171g012genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.7e-18552148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd++l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  PDK_30s722171g012  5 RGPWTVEEDLILMNYIAAHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 52
                       89********************************************97 PP
2Myb_DNA-binding54.42.9e-1758101146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  PDK_30s722171g012  58 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 101
                        7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.811156IPR017930Myb domain
SuperFamilySSF466891.41E-31299IPR009057Homeodomain-like
SMARTSM007175.0E-15454IPR001005SANT/Myb domain
PfamPF002491.8E-16552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-23659IPR009057Homeodomain-like
CDDcd001672.19E-11752No hitNo description
SMARTSM007171.6E-1557105IPR001005SANT/Myb domain
PROSITE profilePS5129419.7157107IPR017930Myb domain
PfamPF002494.4E-1658101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2460106IPR009057Homeodomain-like
CDDcd001676.51E-1262101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDLRRGPWTV EEDLILMNYI AAHGEGRWNS LARCAGLKRT GKSCRLRWLN YLRPDVRRGN  60
ITPEEQLLIL ELHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL QCDVNSKQFK  120
DVMRYLWMPR LIERIRAASG SSPAAIYQNG SVPMAGDHPA EPGFEAGQVK PSPETSSAAG  180
SSSDSAGMHF SSPPIADCFA ECYGGMQGGE NKNGDGTHDV QIGGWWPELL PSPGGNSNLG  240
LPDFEQGAWG ENLWSVEDIW FQQQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-24210524126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793362.10.0transcription factor MYB2-like
SwissprotQ10MB47e-91MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2H3Y4W60.0A0A2H3Y4W6_PHODC; transcription factor MYB2-like
STRINGXP_008793362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-84myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]