PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s722171g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C3H

Protein Properties

Length: 153aa MW: 16958.2 Da PI: 8.9664

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s722171g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.5	2.7e-09	65	86	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCkyGd Ck+ H++ PDK_30s722171g003 65 CHHFVRTGTCKYGDACKYFHPK 86 ********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	1.9E-6	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	5.18E-16	4	46	No hit	No description
Pfam	PF06220	2.1E-11	5	37	IPR013085	Zinc finger, U1-C type
PROSITE profile	PS50103	14.267	59	87	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.8E-4	61	86	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-7	63	88	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.3E-6	64	87	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-7	64	86	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MPLGKYYCDY CDKQFQDTPS ARRRHLQGLQ HQRARALWYD SFKAAEAHGG GPLLQPDGSL 60 AKGVCHHFVR TGTCKYGDAC KYFHPKRDGA NPTPAVSGLN FVETVQSPNF LGNRILSGDM 120 VLDHTGVSWG KLPPSLRPPP ERGYSPLAFV DWG

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727992	3e-35	KJ727992.1 Zea mays clone pUT6112 C3H transcription factor (C3H42) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008793300.1	1e-110	zinc finger CCCH domain-containing protein 3 isoform X1
Swissprot	Q0JP11	3e-53	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A2H3Y4G4	1e-109	A0A2H3Y4G4_PHODC; zinc finger CCCH domain-containing protein 3 isoform X1
STRING	XP_008793300.1	1e-110	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12617	23	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	2e-31	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]