PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s722021g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 207aa    MW: 22540.5 Da    PI: 4.9607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s722021g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP226.51.6e-08841102854
                AP2  28 rkrfslgkfgtaeeAakaaiaarkkle 54 
                        ++r++lg+f +ae+Aa+a+++a++ + 
  PDK_30s722021g004  84 KTRIWLGTFESAEDAARAYDEAARLMC 110
                        48*********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.20842119IPR001471AP2/ERF domain
SMARTSM003806.5E-1369125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-1981119IPR001471AP2/ERF domain
CDDcd000183.24E-1881119No hitNo description
SuperFamilySSF541717.19E-1282120IPR016177DNA-binding domain
PfamPF008471.1E-483111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MHSFLLLLLM ASLILSAPPA AAAVDASKHA GGFGWLDTKL WRYTMTQRRM SEENMDKKGE  60
TLHLPCEDSY VTRDTHLLMF PSRKTRIWLG TFESAEDAAR AYDEAARLMC GPRAKTNFPM  120
DPSGTSTSSA LSPSLVAKLE KCCLASQEET KRAKVAAVDG EEKVECMDEE CIEEMIMELL  180
HCGSVEISFS SSSSSSSSSS SSSSSSS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017701773.18e-81ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW57e-30ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2H4A0602e-79A0A2H4A060_PHODC; ethylene-responsive transcription factor ERF003-like
STRINGXP_008779295.11e-52(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-11ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]