PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s721891g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 378aa    MW: 42037.2 Da    PI: 5.8562
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s721891g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.85.3e-13983781374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l+e+L++cA+av+++d++ +++l+a+l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   ss+ l++++++++v+P++k
  PDK_30s721891g003   8 LKETLIACARAVAENDAQVVDWLIAELRQMVSVSGEPIQRLGAYMLEGLTARLASSGSSIYKALKCKEPT---SSDLLSYMHILYDVCPYFK 96 
                        5789*****************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f++l aN aI eav++e+rvH iDf+i qG QW++Llqa+a+Rp+gpp +RiTg++++ s   +   l+ +g+rL ++Ae++ vpfef++ +
  PDK_30s721891g003  97 FAYLSANGAIAEAVKNEDRVHLIDFQIAQGSQWMSLLQAFAARPGGPPCVRITGIDDSMSAyaRGGGLHIVGQRLLRLAESCSVPFEFHA-A 187
                        *********************************************************888789999************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                          ++ dle+++L ++pgEalaVn+ +qlh+++desvs+e++rd++L++vk+lsPkvv++veqe+++n++++++rf+e+l+yy+a+f+s++++
  PDK_30s721891g003 188 DVSCCDLEVKDLGIQPGEALAVNFPFQLHHVPDESVSTENHRDRILRMVKGLSPKVVTLVEQESNTNTAPLFQRFVETLNYYTAIFESIDVT 279
                        889***************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        lpres+eri+vE+++l+r+ivn++acegaer+erhe ++kW++r+++aGF+p+pls ++++++k+ll+k+ ++ y++ee++g l+lgWk++ 
  PDK_30s721891g003 280 LPRESKERINVEQHCLARDIVNIIACEGAERVERHELFGKWKSRFTMAGFSPLPLSPFVNATIKSLLAKYCEN-YTLEERDGVLYLGWKNKL 370
                        ***********************************************************************55.****************** PP

               GRAS 367 LvsvSaWr 374
                        L + SaWr
  PDK_30s721891g003 371 LSVSSAWR 378
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.8951359IPR005202Transcription factor GRAS
PfamPF035141.8E-1368378IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MGIPEGDLKE TLIACARAVA ENDAQVVDWL IAELRQMVSV SGEPIQRLGA YMLEGLTARL  60
ASSGSSIYKA LKCKEPTSSD LLSYMHILYD VCPYFKFAYL SANGAIAEAV KNEDRVHLID  120
FQIAQGSQWM SLLQAFAARP GGPPCVRITG IDDSMSAYAR GGGLHIVGQR LLRLAESCSV  180
PFEFHAADVS CCDLEVKDLG IQPGEALAVN FPFQLHHVPD ESVSTENHRD RILRMVKGLS  240
PKVVTLVEQE SNTNTAPLFQ RFVETLNYYT AIFESIDVTL PRESKERINV EQHCLARDIV  300
NIIACEGAER VERHELFGKW KSRFTMAGFS PLPLSPFVNA TIKSLLAKYC ENYTLEERDG  360
VLYLGWKNKL LSVSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-66103786375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780980.10.0scarecrow-like protein 21
RefseqXP_026657955.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2H3XAK50.0A0A2H3XAK5_PHODC; scarecrow-like protein 21
STRINGXP_008780980.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]