PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s720491g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 265aa    MW: 29967 Da    PI: 9.7367
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s720491g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-13151230485
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        +lt s +  ++rl++p + a+++  +   +  l++ d +s r W ++++ + +++ry + +GW++F+k++ Lk  D+++Fk  
  PDK_30s720491g002 151 KLTYSGMQYLNRLIIPAQPAKRFFPD--AP-YLMFWDeQSRRWWIFQYCRSSCGQRYAFVSGWSSFAKEKALKPDDTLIFKAF 230
                        5677888889************9644..34.46666625557789***88888888************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-16141234IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-10147228No hitNo description
SuperFamilySSF1019365.69E-15147234IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.573148249IPR003340B3 DNA binding domain
SMARTSM010191.9E-4149242IPR003340B3 DNA binding domain
PfamPF023623.8E-11152231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MASLPSNQYG FPLVAVKEEV DDPGFHISSS LHHFPTRQEG THAMMMASSS SSRARGNNAR  60
TLQRLGSGMP MPYSNAVWNI AQTYATGIHY INNLVSNLSR PELPVRKLGF QDPISRSHRL  120
SIGGHSAIPT GPRSDGDGRG NSEGRELFGL KLTYSGMQYL NRLIIPAQPA KRFFPDAPYL  180
MFWDEQSRRW WIFQYCRSSC GQRYAFVSGW SSFAKEKALK PDDTLIFKAF TDNEILENCY  240
YTIDVRRAAR KKEQIKLFGA VIEID
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026664259.11e-165B3 domain-containing protein Os02g0683500-like
TrEMBLA0A3Q0IBP31e-163A0A3Q0IBP3_PHODC; B3 domain-containing protein Os02g0683500-like
STRINGXP_008803590.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3754523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-11B3 family protein