PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s719751g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | TCP | ||||||||
Protein Properties | Length: 306aa MW: 34341.6 Da PI: 7.9923 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 95.8 | 8.2e-30 | 46 | 119 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++ ++ ++ PDK_30s719751g001 46 GGKDRHSKVSTIRGLRDRRVRLSVPTAIQVYDLQDKLGVNQPSKVVDWLLNAAQHEIDKLPPLQMPPGNFIqfP 119 78*************************************************************88888766321 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-28 | 47 | 154 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.736 | 47 | 105 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MIRNSREEEL LAREEGGTDV DKFPVSSRPW PALKNPRIVR ASRTFGGKDR HSKVSTIRGL 60 RDRRVRLSVP TAIQVYDLQD KLGVNQPSKV VDWLLNAAQH EIDKLPPLQM PPGNFIQFPQ 120 SMAISHKLAP PQAPSFHPTG DGTDFILDDM LDSNTVENAM MVQKSTFWNS DVLLKNKEKE 180 AVKEPSMEKG SMIKGNDVGS GLQNNAMSYP SYHHWDPSNA HISHLGHPSR AEGFHSCQPV 240 SMFASYMNAS TDFNAKQYKH LHMENSASQL LPSNSLRTSL QSGNPSLELL QPNLTFKHHH 300 PQDHQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 52 | 106 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 52 | 106 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008810756.1 | 0.0 | transcription factor TCP13-like | ||||
Refseq | XP_026666202.1 | 0.0 | transcription factor TCP13-like | ||||
TrEMBL | A0A2H3ZA71 | 0.0 | A0A2H3ZA71_PHODC; transcription factor TCP13-like | ||||
STRING | XP_008810756.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 2e-42 | plastid transcription factor 1 |