PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s718951g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 706aa    MW: 76826.8 Da    PI: 6.8502
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s718951g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23125226199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   
  PDK_30s718951g001 125 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDAHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL-- 212
                        89****************************996555555..8999*********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++ l+v+++r+
  PDK_30s718951g001 213 RAENGDLCVGIRRA 226
                        4488999****997 PP
2Auxin_resp115.83.8e-38295378183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a+++++Fev+Y+Pra+t+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+ WpnS+Wr+L+
  PDK_30s718951g001 295 AATLAANGQPFEVIYYPRAGTPEFCVKAAAVKAAMRIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIGWPNSPWRLLQ 378
                        68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-38115229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.16E-29121231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-20124225No hitNo description
PROSITE profilePS5086313.14125227IPR003340B3 DNA binding domain
SMARTSM010191.8E-21125227IPR003340B3 DNA binding domain
PfamPF023629.2E-22125226IPR003340B3 DNA binding domain
PfamPF065075.2E-33295378IPR010525Auxin response factor
PROSITE profilePS5174518.771620700IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MITFSSEPVK ESMKDADKCL DSQLWHACAG GMVQMPAVNS KVYYFPQGHA EHAQGIVDFG  60
SFPRVPALVL CRVTVVKFMA DPETDEVFAK IHMVPVRSNE PDSGDDDGMG LGSNAADVQE  120
KPASFAKTLT QSDANNGGGF SVPRYCAETI FPRLDYSADP PVQTVLAKDA HGEVWKFRHI  180
YRGTPRRHLL TTGWSTFVNQ KKLVAGDSIV FLRAENGDLC VGIRRAKRGV GGGHESPSGW  240
NPPTGNCVSA YGGFSVFLRE EENKLMRSNG NGGNLDSGGN MRGRGRVRAD SVIEAATLAA  300
NGQPFEVIYY PRAGTPEFCV KAAAVKAAMR IRWCPGMRFK MAFETEDSSR ISWFMGTISS  360
VQVADPIGWP NSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPAIHLA PFSPPRKKIC  420
IPQRPEFPIE GQLPTPSFPR NPFGPSSSPL CCFPDSTPAG IQGARHAQFG LALSDLRLNK  480
LQSDLFHAGL HRLDQATAHS RISTGLIIGN PAIHDNVSCL LTTATPSQRT KKLCNGKSPQ  540
LVLFGQPILT EQQISLSNSG DTVSPGVTGN SSLDGNPERT TNVSDGSGSA VHQNGLAENS  600
SCEGFPWYRD RQASELGLET GHCKVFMESE DVGRTLDLSV LGSYEELYGR LADMFGIDKS  660
EMMSHVLYRD AVGAVKQTGD EPFSEFMKTA RRLTILADSG SDNLGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-782039951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785274.10.0auxin response factor 18-like isoform X1
RefseqXP_026659199.10.0auxin response factor 18-like isoform X1
RefseqXP_026659200.10.0auxin response factor 18-like isoform X1
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2H3XKR60.0A0A2H3XKR6_PHODC; Auxin response factor
STRINGXP_008785274.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]