PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s717771g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YB | ||||||||
Protein Properties | Length: 213aa MW: 23820.2 Da PI: 9.0944 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 171.4 | 1e-53 | 23 | 118 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 reqdrf+Pianv+rim+kvlP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d++wa+++lGfedyv+pl+ yl++yrel PDK_30s717771g002 23 REQDRFMPIANVIRIMRKVLPLQAKISDDAKETIQECVSEYISFITGEANERCQREHRKTITAEDVIWAMGKLGFEDYVAPLNRYLHRYREL 114 89****************************************************************************************** PP NF-YB 94 egek 97 eg++ PDK_30s717771g002 115 EGDQ 118 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.0E-48 | 20 | 119 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.12E-37 | 25 | 119 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.6E-25 | 28 | 92 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 5.6E-15 | 56 | 74 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 59 | 75 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 5.6E-15 | 75 | 93 | No hit | No description |
PRINTS | PR00615 | 5.6E-15 | 94 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MARPLAGGVN SSQAGPAGVS NLREQDRFMP IANVIRIMRK VLPLQAKISD DAKETIQECV 60 SEYISFITGE ANERCQREHR KTITAEDVIW AMGKLGFEDY VAPLNRYLHR YRELEGDQRV 120 GLRGEHFPII KHRRHPQIRD IDRSPPVRAQ TPLIRSPRPP PSSLVMPPTA PLPRLNHLFG 180 EDPGAGYFLG MYRGGDGSGT GNSEAPPMPD FFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 5e-55 | 21 | 113 | 5 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008805507.1 | 1e-150 | nuclear transcription factor Y subunit B-10 | ||||
Swissprot | Q84W66 | 5e-56 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A2H3YXS8 | 1e-149 | A0A2H3YXS8_PHODC; nuclear transcription factor Y subunit B-10 | ||||
STRING | XP_008805507.1 | 1e-150 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-58 | nuclear factor Y, subunit B6 |