PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s716981g007

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 509aa MW: 55510.6 Da PI: 9.4425

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s716981g007	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PDK_30s716981g007 75 FVCEICNKGFQRDQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	12.4	0.00047	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + PDK_30s716981g007 151 WKCDKCSKKYAVQSDWKAHAKIC 173 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.17E-7	74	97	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	74	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	8.1E-5	75	97	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	75	97	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	116	146	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.8E-4	139	172	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.17E-7	146	171	No hit	No description
SMART	SM00355	150	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MMKGLIIQQH QLVEENMSNL TSASGEASVS SNQQSSFASP NPAPVKKKRN LPGNPDPDAE 60 VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSSKE VKKKVYICPE 120 VTCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHA KICGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAEESARVM TANPLADNHP LLFSQPASSH APSPLPHNAL 240 QAQFTHLMRT TAANTNIIGS HGLQEFSLKR EQHLGMRADI PPWLASQGPA SLNQFDLPSS 300 IHSTRLEQQY SHENPAPPPP PFPPHYQGPS TAASSHMSAT ALLQKAAQMG ATMSRPPHHG 360 QMVTHTTNAT VANTTGTGFG LGLTSHQEMA GGGGGGFGHG SAPPLLQDMM MNSLPSPAGF 420 GGPFEEPFGV MLGAKREENT TMESIARRHG RNEEGRSAGA GGGNDGLTRD FLGLRAFSHR 480 DILNMAGFDP CMSSSSYEQS QQNKKPWHG

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MMKGLIIQQH QLVEENMSNL TSASGEASVS SNQQSSFASP NPAPVKKKRN LPGNPDPDAE  60
VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRSSKE VKKKVYICPE  120
VTCVHHDPSR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHA KICGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAEESARVM TANPLADNHP LLFSQPASSH APSPLPHNAL  240
QAQFTHLMRT TAANTNIIGS HGLQEFSLKR EQHLGMRADI PPWLASQGPA SLNQFDLPSS  300
IHSTRLEQQY SHENPAPPPP PFPPHYQGPS TAASSHMSAT ALLQKAAQMG ATMSRPPHHG  360
QMVTHTTNAT VANTTGTGFG LGLTSHQEMA GGGGGGFGHG SAPPLLQDMM MNSLPSPAGF  420
GGPFEEPFGV MLGAKREENT TMESIARRHG RNEEGRSAGA GGGNDGLTRD FLGLRAFSHR  480
DILNMAGFDP CMSSSSYEQS QQNKKPWHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	147	209	3	65	Zinc finger protein JACKDAW
5b3h_F	2e-35	147	209	3	65	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008793218.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q9LRW7	1e-126	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A2H3Y491	0.0	A0A2H3Y491_PHODC; protein indeterminate-domain 7-like
STRING	XP_008793218.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-104	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]