PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s715801g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 184aa MW: 21563.7 Da PI: 7.5645

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s715801g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.5	1.3e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv++yL++k++g k+el ++i+evd+yk+ePw+L k + +++ ewyf +rd+ky++g r+nrat++gyWk+tgkd+ PDK_30s715801g001 6 LPPGFRFHPTDEELVNYYLERKIHGLKIEL-DIIPEVDLYKCEPWELAdKsFLPSGDPEWYFLGPRDRKYPNGFRTNRATRAGYWKSTGKDR 96 79**************************.99**********85335566888****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v++ +++++g+kktLv+y+grap+g +tdWvmheyrl PDK_30s715801g001 97 RVVR-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 9.8999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-58	4	140	IPR003441	NAC domain
PROSITE profile	PS51005	54.111	6	150	IPR003441	NAC domain
Pfam	PF02365	4.7E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLERKIHG LKIELDIIPE VDLYKCEPWE LADKSFLPSG 60 DPEWYFLGPR DRKYPNGFRT NRATRAGYWK STGKDRRVVR QNRAIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKECED TMGIQVVFII IAFQVIALLE DDVFSSKIRE HSADEDKIPL 180 RISL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-51	2	133	11	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392206.1	1e-102	PREDICTED: NAC domain-containing protein 86
Refseq	XP_010940228.1	1e-102	NAC domain-containing protein 45-like
Refseq	XP_020079952.1	1e-102	NAC domain-containing protein 86-like
Refseq	XP_020702745.1	1e-103	NAC domain-containing protein 86
Swissprot	A4VCM0	2e-78	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A0K9PDJ8	1e-102	A0A0K9PDJ8_ZOSMR; NAC domain protein
STRING	GSMUA_Achr3P13880_001	1e-102	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3713	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	5e-95	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]