PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s715801g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 184aa    MW: 21563.7 Da    PI: 7.5645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s715801g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.51.3e-5361331128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeelv++yL++k++g k+el ++i+evd+yk+ePw+L  k  + +++ ewyf  +rd+ky++g r+nrat++gyWk+tgkd+
  PDK_30s715801g001   6 LPPGFRFHPTDEELVNYYLERKIHGLKIEL-DIIPEVDLYKCEPWELAdKsFLPSGDPEWYFLGPRDRKYPNGFRTNRATRAGYWKSTGKDR 96 
                        79****************************.99**************85335566888********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v++ +++++g+kktLv+y+grap+g +tdWvmheyrl
  PDK_30s715801g001  97 RVVR-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133
                        ***9.8999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-584140IPR003441NAC domain
PROSITE profilePS5100554.1116150IPR003441NAC domain
PfamPF023654.7E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLERKIHG LKIELDIIPE VDLYKCEPWE LADKSFLPSG  60
DPEWYFLGPR DRKYPNGFRT NRATRAGYWK STGKDRRVVR QNRAIGMKKT LVYYRGRAPQ  120
GIRTDWVMHE YRLDDKECED TMGIQVVFII IAFQVIALLE DDVFSSKIRE HSADEDKIPL  180
RISL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-51213311140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392206.11e-102PREDICTED: NAC domain-containing protein 86
RefseqXP_010940228.11e-102NAC domain-containing protein 45-like
RefseqXP_020079952.11e-102NAC domain-containing protein 86-like
RefseqXP_020702745.11e-103NAC domain-containing protein 86
SwissprotA4VCM02e-78NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A0K9PDJ81e-102A0A0K9PDJ8_ZOSMR; NAC domain protein
STRINGGSMUA_Achr3P13880_0011e-102(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.15e-95NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]