PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s714681g012

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 285aa MW: 31268.7 Da PI: 8.4524

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s714681g012	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	49.8	7.5e-16	91	120	26	55
G2-like 26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 +AtPkti+++m+vkgLtl h+kSHLQkYRl PDK_30s714681g012 91 EATPKTIMRTMGVKGLTLFHLKSHLQKYRL 120 7****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.09E-6	85	122	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-10	90	121	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	3.6E-14	90	121	IPR009057	Homeodomain-like
Pfam	PF14379	4.0E-22	161	206	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MQKEGWFATP TAFTSKEPLL ATKLVAWSDG PLPFGPPLFP RKEMFSGVIH RSEASVPQEE 60 AHGLRLVLTA DPKPRLRSVY YTFEGIAAYA EATPKTIMRT MGVKGLTLFH LKSHLQKYRL 120 GKQSGKEMTD QSKDASYPSE TLSSSGLSPG VPAPDVNEGQ EVKEALRAQM EVQRSLHEQL 180 EVQKHVQIRM EAYHKYIDSL LEKACKIASE QIAASGFNAT GHDLPDLATG IICSPSDPLS 240 PSVFHQLSVG AISLHSPGGK TSPSSAIEGY LFYHQKAPEL KRRPC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008794716.1	1e-140	protein PHR1-LIKE 2-like
Swissprot	Q94A57	2e-51	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2H3Y853	1e-139	A0A2H3Y853_PHODC; protein PHR1-LIKE 2-like
STRING	XP_008794716.1	1e-140	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-53	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]