PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s714681g011

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 340aa MW: 36762 Da PI: 7.0298

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s714681g011	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.3e-33	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHerFv+av+qLGG+e+AtPk +l++m+v gLt++hvkSHLQkYRl PDK_30s714681g011 48 RQRLRWTHELHERFVDAVTQLGGPERATPKGVLRTMGVTGLTIYHVKSHLQKYRL 102 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.301	45	105	IPR017930	Myb domain
SuperFamily	SSF46689	4.66E-17	47	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-31	47	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-25	49	103	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-8	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-23	134	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MYQPKPISNL VSAHSNPLVC DQPIELAGNN MGPCSGGTNQ NNPNLASRQR LRWTHELHER 60 FVDAVTQLGG PERATPKGVL RTMGVTGLTI YHVKSHLQKY RLAKYIPESS SDGTKAAKKD 120 SGDLLSGLEN SSGMQITEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR 180 LGGVMAETPS ASIPAPISGN QCLDSDKTDP STPAPTSESP LQVKAASGDH GGSGGLFKSL 240 SHDDSFSSHH EPLTPDSSCR AGSSFESPKH ERPIKRQREA SDPGNGKTEL VLVHHILESS 300 SGSDFQQPCS IFPARGGHFD STGTSICDDD RLKNGSGSDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008782978.1	0.0	myb family transcription factor PHL7-like
Refseq	XP_008782979.1	0.0	myb family transcription factor PHL7-like
Refseq	XP_026658512.1	0.0	myb family transcription factor PHL7-like
Swissprot	Q9SJW0	1e-110	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2H3XFE7	0.0	A0A2H3XFE7_PHODC; myb family transcription factor PHL7-like
STRING	XP_008782978.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-90	G2-like family protein