PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s714561g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 211aa    MW: 23015.6 Da    PI: 5.1912
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s714561g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000157496123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C + F ++  L  H++ H
  PDK_30s714561g004 74 FSCNYCQRKFYSSQALGGHQNAH 96
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.44E-771102No hitNo description
Gene3DG3DSA:3.30.160.600.00172100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.42774101IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEEEKGREEK EEEGDGERQE IMLVDLESDD KDDGEGSTPV PPVLELNLLE SFGSSVEAEQ  60
PAAVLKSTSE PKVFSCNYCQ RKFYSSQALG GHQNAHKRER SLTKRGPRPG LGLADHPVRF  120
SPPNMEAVGN SGALHGPQTL LWGGTFHGRG SAKWAAWRPA VGRLRMEDFW AAPSARFDEP  180
GVAAGGYRWG GGNQLSAGKE EVQKLDLSLK L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806291.18e-79zinc finger protein 1-like
TrEMBLA0A2H3YZU12e-77A0A2H3YZU1_PHODC; zinc finger protein 1-like
STRINGXP_008806291.13e-78(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-20C2H2 family protein