PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s712151g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HB-PHD
Protein Properties Length: 572aa    MW: 64898.6 Da    PI: 7.8649
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s712151g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.13.9e-05393425941
                        HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-H CS
           Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLte 41 
                        ++ ++ L ++F++n  ps++ +e L+k+lg++ 
  PDK_30s712151g006 393 SNAVQKLRQVFAENELPSRAVKENLSKQLGISS 425
                        67899*************************987 PP
2PHD33.87.8e-12130183151
                        SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpegewlCeeCkek 51 
                        +C+ C++  +  +++++lCd +C+  fH+kCl+++le+ +  ++ wlC+ C++k
  PDK_30s712151g006 130 FCAKCRSreTFPDNDIILCDgTCNCGFHQKCLEPPLEKIPPGDQGWLCKFCECK 183
                        699***965555********56***************8888888*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.02E-14122186IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.5E-12127184IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.549128183IPR019787Zinc finger, PHD-finger
CDDcd155042.22E-28130180No hitNo description
PfamPF006282.0E-9130183IPR019787Zinc finger, PHD-finger
SMARTSM002497.4E-7130181IPR001965Zinc finger, PHD-type
PROSITE patternPS013590131180IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.2E-6378425IPR009057Homeodomain-like
SMARTSM003890.0085384495IPR001356Homeobox domain
CDDcd000860.00159385424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MRRKNIPNGK PVETLQRISH SHSAKGQFSL PFLGNNNSYI CHKGNRKVAA CDRAIKLDKR  60
KRRKRKKKNI ERDEASRLQR RARYLLIKMK LEQNLLDAYS GDGWNGQSSI GSIEDSVMYP  120
DGSVFHEHIF CAKCRSRETF PDNDIILCDG TCNCGFHQKC LEPPLEKIPP GDQGWLCKFC  180
ECKMEILEAI NAHLGTCFAA NSSWEDIFKE AATSPDAGYT YLNHAEEWPS EDSEDEDYNP  240
EINENSNSRT GVDENMAGDS SSSSSLFCSS DEAMSYSESR HNNGNGGSYH VRHKDRNKAD  300
FVDSIINSES GETNDCEIMS YRRQRRDEMF GKDLAENEQQ SEDEDWGPHR MKRRRTESIT  360
GTITDNCVNE AGCSDISTKK ISLDKKPLFR IPSNAVQKLR QVFAENELPS RAVKENLSKQ  420
LGISSEKAGI AKPHNVNNVT KRSRINAGKA GSFDEVASID NSVLLPLSSI IHVRRNLRKL  480
FQRKKQKSLN IPSRTQHKRA ANTESANEFQ LYAAEIERLC SLEERLRNLK KALLSCQDNE  540
YESDKSHLNE PSVIYVPVAE VREREGYLKI IS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863KRKRRK
25967RKRRKRKKK
36167RRKRKKK
46266RKRKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929360.10.0pathogenesis-related homeodomain protein
SwissprotP487856e-88PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A3Q0IMN60.0A0A3Q0IMN6_PHODC; pathogenesis-related homeodomain protein-like isoform X1
STRINGXP_008811453.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.25e-89pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]