PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s711401g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MIKC_MADS
Protein Properties Length: 271aa    MW: 31593.8 Da    PI: 6.838
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s711401g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12.1e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien +nrqvtfskRr g+lKKA+EL +LCda+v v+ifsstgk++eyss
  PDK_30s711401g001  9 KRIENPTNRQVTFSKRRGGLLKKANELAILCDAQVGVVIFSSTGKMFEYSS 59
                       79***********************************************96 PP
2K-box70.26.6e-2475167596
              K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                        ++++  +  +++++  e++ +++e ++Lq + R++ Ge+L+s+++++L+qLeqqLe s++k+R++K++ll +q+++l++ke+ ++ +n+ L 
  PDK_30s711401g001  75 TNTRiEDIDNQQQMFYEISWMRNESDKLQASMRQYTGENLSSMTMNDLNQLEQQLEYSVNKVRTTKHQLLNQQLDNLRRKEHIVEVQNNHLC 166
                        5555556678999****************************************************************************997 PP

              K-box  96 k 96 
                        +
  PDK_30s711401g001 167 R 167
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.156161IPR002100Transcription factor, MADS-box
CDDcd002651.92E-44272No hitNo description
SuperFamilySSF554552.09E-33281IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2481167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.84585180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRGKIEIKR IENPTNRQVT FSKRRGGLLK KANELAILCD AQVGVVIFSS TGKMFEYSSP  60
PLSMHQIIDR YQRVTNTRIE DIDNQQQMFY EISWMRNESD KLQASMRQYT GENLSSMTMN  120
DLNQLEQQLE YSVNKVRTTK HQLLNQQLDN LRRKEHIVEV QNNHLCRILS EHQLTMEHQQ  180
VAMEHKELET PMLDHFGQFY HDEPSRSLLQ LAPQLHAFHL QPAQPNLQEA SLPGHGLQLC  240
HNHLLIINNI AFSDHIITFN VLDNDIKPHN D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-19171169MEF2C
5f28_B5e-19171169MEF2C
5f28_C5e-19171169MEF2C
5f28_D5e-19171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017699792.11e-172MADS-box transcription factor 29-like
SwissprotQ6H7113e-96MAD29_ORYSJ; MADS-box transcription factor 29
TrEMBLA0A2H3ZTL21e-170A0A2H3ZTL2_PHODC; MADS-box transcription factor 29-like
STRINGXP_008798240.11e-177(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.29e-52MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li M,Sun P,Zhou H,Chen S,Yu S
    Identification of quantitative trait loci associated with germination using chromosome segment substitution lines of rice (Oryza sativa L.).
    Theor. Appl. Genet., 2011. 123(3): p. 411-20
    [PMID:21512773]
  3. Yin LL,Xue HW
    The MADS29 transcription factor regulates the degradation of the nucellus and the nucellar projection during rice seed development.
    Plant Cell, 2012. 24(3): p. 1049-65
    [PMID:22408076]
  4. Yang X, et al.
    Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa).
    PLoS ONE, 2012. 7(12): p. e51435
    [PMID:23251532]
  5. Nayar S,Sharma R,Tyagi AK,Kapoor S
    Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis.
    J. Exp. Bot., 2013. 64(14): p. 4239-53
    [PMID:23929654]
  6. Nayar S,Kapoor M,Kapoor S
    Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
    J. Exp. Bot., 2014. 65(18): p. 5339-50
    [PMID:25096923]
  7. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]