PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s711191g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | TALE | ||||||||
Protein Properties | Length: 153aa MW: 17649 Da PI: 7.7168 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.7 | 2.6e-10 | 88 | 120 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+++LA+ +gL+ +q+ +WF N+R ++ PDK_30s711191g004 88 PYPTEEEKAKLAEMTGLDPKQINNWFINQRKRH 120 8*****************************985 PP | |||||||
2 | ELK | 36.5 | 1.1e-12 | 40 | 61 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL++L++EF+ PDK_30s711191g004 40 ELKEMLLKKYSGYLSNLRKEFL 61 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03789 | 3.9E-10 | 40 | 61 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.261 | 40 | 60 | IPR005539 | ELK domain |
SMART | SM01188 | 1.9E-6 | 40 | 61 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.989 | 60 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-15 | 62 | 127 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-21 | 62 | 132 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.4E-28 | 65 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.57E-13 | 72 | 124 | No hit | No description |
Pfam | PF05920 | 8.8E-18 | 80 | 119 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MQKHSLLSDE VAGSSEEELS CGDVDASESL ESGSRLADHE LKEMLLKKYS GYLSNLRKEF 60 LKKRKKGKLP KDARLTLLDW WHTHYRWPYP TEEEKAKLAE MTGLDPKQIN NWFINQRKRH 120 WKPSEDMQFA LMEGVSGGSN GTMLYFDRGT VGP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 64 | LRKEFLKKRK |
2 | 61 | 65 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:10488233}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU937115 | 1e-179 | GU937115.1 Cocos nucifera KNOTTED-like homebox protein 2 (KNOX2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010921494.1 | 9e-90 | homeobox protein knotted-1-like 1 | ||||
Swissprot | A2Y007 | 3e-70 | KNOSA_ORYSI; Homeobox protein knotted-1-like 10 | ||||
Swissprot | Q7GDL5 | 3e-70 | KNOSA_ORYSJ; Homeobox protein knotted-1-like 10 | ||||
TrEMBL | F2YNF2 | 7e-88 | F2YNF2_ELAGV; Knotted-like homebox protein | ||||
STRING | XP_008781110.1 | 5e-88 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1698 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 5e-39 | KNOTTED-like from Arabidopsis thaliana |