PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s710961g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 174aa MW: 19845.8 Da PI: 8.8163 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.7 | 5.3e-54 | 9 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp GfrFhPtdeelv++yLk+k++g+ +++evi+e+d++k+ePwdLp k +++++ ew+fF+++d+kya+g+r+nrat++gyWkatgkd+ PDK_30s710961g004 9 LPLGFRFHPTDEELVNHYLKRKISGRIKSEAEVIPEIDVCKCEPWDLPdKsIIRSDDPEWFFFAPKDRKYANGHRSNRATEAGYWKATGKDR 100 699************************99999***************96446667778********************************** PP NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + sk +++++g+kktLvf++grapkg +t+W+mheyr PDK_30s710961g004 101 VIRSKaaaaGHNVIGMKKTLVFHQGRAPKGIRTSWIMHEYRT 142 ****988888888***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-57 | 4 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.741 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-29 | 10 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MTAIALQLLP LGFRFHPTDE ELVNHYLKRK ISGRIKSEAE VIPEIDVCKC EPWDLPDKSI 60 IRSDDPEWFF FAPKDRKYAN GHRSNRATEA GYWKATGKDR VIRSKAAAAG HNVIGMKKTL 120 VFHQGRAPKG IRTSWIMHEY RTTEPEFESG VQDYIFEVIP ICVGTDSMVL IRAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-45 | 9 | 150 | 17 | 150 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-45 | 9 | 150 | 17 | 150 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-45 | 9 | 150 | 17 | 150 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-45 | 9 | 150 | 17 | 150 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-45 | 9 | 150 | 20 | 153 | NAC domain-containing protein 19 |
3swm_B | 3e-45 | 9 | 150 | 20 | 153 | NAC domain-containing protein 19 |
3swm_C | 3e-45 | 9 | 150 | 20 | 153 | NAC domain-containing protein 19 |
3swm_D | 3e-45 | 9 | 150 | 20 | 153 | NAC domain-containing protein 19 |
3swp_A | 3e-45 | 9 | 150 | 20 | 153 | NAC domain-containing protein 19 |
3swp_B | 3e-45 | 9 | 150 | 20 | 153 | NAC domain-containing protein 19 |
3swp_C | 3e-45 | 9 | 150 | 20 | 153 | NAC domain-containing protein 19 |
3swp_D | 3e-45 | 9 | 150 | 20 | 153 | NAC domain-containing protein 19 |
4dul_A | 3e-45 | 9 | 150 | 17 | 150 | NAC domain-containing protein 19 |
4dul_B | 3e-45 | 9 | 150 | 17 | 150 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017702021.1 | 1e-108 | protein NTM1-like 9 | ||||
Swissprot | F4JN35 | 3e-68 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A2H4A0S1 | 1e-106 | A0A2H4A0S1_PHODC; protein NTM1-like 9 | ||||
STRING | XP_008811393.1 | 1e-111 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-70 | NAC transcription factor-like 9 |
Publications ? help Back to Top | |||
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