PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s710451g012

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Nin-like

Protein Properties

Length: 396aa MW: 43270 Da PI: 8.0525

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s710451g012	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	95.8	2.8e-30	11	62	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ PDK_30s710451g012 11 AEKNISLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 62 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.904	1	82	IPR003035	RWP-RK domain
Pfam	PF02042	8.3E-27	14	62	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.07E-23	289	381	No hit	No description
PROSITE profile	PS51745	22.263	297	379	IPR000270	PB1 domain
SMART	SM00666	3.6E-20	297	379	IPR000270	PB1 domain
Pfam	PF00564	4.7E-17	298	378	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.7E-23	298	379	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MRHKEKKCST AEKNISLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN 60 KVNRSLKKIQ TVINSVQGVE GALRYDPASG CLVAAVSSPQ KPAMMTSESS GRAYMPVSSA 120 HVETEQSIGK SEPNYSSVDV HQRETSGQLK FTNMHKCEKD EFPVPPDGCS NECKCTSASG 180 GLLQQANIEG TPSWPIYSKD IFHSSYLTKE TGCQRAFGKG DLSLQSLECQ IMSRGSGCMT 240 PMDEMNGKVN ADDGIIEHSH PSSSSMTDSS SGSASSCPTF NKRSKSKASV TEKSGPVITV 300 KATYKDDTVR FKFLPSMGCH HLFEEVGKRF KLLAGTFQLK YMDDEEEWVI LASDSDLREC 360 VEVLEYVGSH SVKLQVRDVP CVIGSSASSN SLLMEP

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MRHKEKKCST AEKNISLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN  60
KVNRSLKKIQ TVINSVQGVE GALRYDPASG CLVAAVSSPQ KPAMMTSESS GRAYMPVSSA  120
HVETEQSIGK SEPNYSSVDV HQRETSGQLK FTNMHKCEKD EFPVPPDGCS NECKCTSASG  180
GLLQQANIEG TPSWPIYSKD IFHSSYLTKE TGCQRAFGKG DLSLQSLECQ IMSRGSGCMT  240
PMDEMNGKVN ADDGIIEHSH PSSSSMTDSS SGSASSCPTF NKRSKSKASV TEKSGPVITV  300
KATYKDDTVR FKFLPSMGCH HLFEEVGKRF KLLAGTFQLK YMDDEEEWVI LASDSDLREC  360
VEVLEYVGSH SVKLQVRDVP CVIGSSASSN SLLMEP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008800674.1	0.0	protein NLP2-like
Swissprot	Q0JC27	1e-105	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2H3YLT2	0.0	A0A2H3YLT2_PHODC; protein NLP2-like
STRING	XP_008800674.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	3e-78	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]