PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s709981g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 308aa    MW: 33902.9 Da    PI: 6.2538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s709981g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  PDK_30s709981g002 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                       79********************************************97 PP

2Myb_DNA-binding50.83.9e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  PDK_30s709981g002  67 RGNFTDQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                        89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.063961IPR017930Myb domain
SuperFamilySSF466893.71E-3011108IPR009057Homeodomain-like
SMARTSM007171.8E-131363IPR001005SANT/Myb domain
PfamPF002495.4E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-241568IPR009057Homeodomain-like
CDDcd001671.75E-111661No hitNo description
PROSITE profilePS5129424.88762116IPR017930Myb domain
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002493.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2569117IPR009057Homeodomain-like
CDDcd001672.20E-1169111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKLE  120
TGVEGQTSTG VSSHNSISKG QWERRLQTDI NTAKQALCEA LSVEKLNCLS DVKASTNGYN  180
WSTAPSTYAS STANISRLLE GWTRNSTRTG ASQANSGSTQ THDTASSQGT PSAANCILSP  240
EPLESLFGLD ASSTEASESS LLGEERKPVF EAQEPLFFLE SWLLDEGVGH GQLSLLDMAL  300
DDAPDQLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-26141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-251411627128MYB TRANSFORMING PROTEIN
1mse_C8e-26141164105C-Myb DNA-Binding Domain
1msf_C8e-26141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780601.10.0myb-related protein 306-like
SwissprotP813921e-113MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A2H3XA400.0A0A2H3XA40_PHODC; myb-related protein 306-like
STRINGXP_008780601.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.22e-95myb domain protein 96
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]