PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s709531g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 284aa    MW: 31912.3 Da    PI: 6.9849
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s709531g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.3e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++ Ed++l d++k +G g W+  + + g++R++k+c++rw++yl
  PDK_30s709531g001 14 RGAWSAHEDKILTDYIKAHGEGKWNVLPTRAGLKRCGKSCRLRWLNYL 61
                       89********************************************97 PP
2Myb_DNA-binding50.64.4e-1667110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++
  PDK_30s709531g001  67 RGNISHEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110
                        78999*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.694961IPR017930Myb domain
SuperFamilySSF466891.19E-2712108IPR009057Homeodomain-like
SMARTSM007173.8E-121363IPR001005SANT/Myb domain
PfamPF002492.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-221568IPR009057Homeodomain-like
CDDcd001671.22E-81661No hitNo description
PROSITE profilePS5129425.03262116IPR017930Myb domain
SMARTSM007172.4E-1566114IPR001005SANT/Myb domain
PfamPF002491.9E-1467110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2469116IPR009057Homeodomain-like
CDDcd001673.42E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGRRACCSKE GLNRGAWSAH EDKILTDYIK AHGEGKWNVL PTRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SHEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT KLSKEVKGIP  120
QRFINGERVQ SKSKERKAVA GLKAEAPKEL GEQSHPVIRP KAVRCTKVYS PPQQDDKMAD  180
RCLEPLSNKH ALESIPEDVD PFADFDMEGL LSEVHDDDFL QVGMDEPRED STGIRGQDGL  240
IVMPSTCSDL SCHFHGAMLE EWSVGDGLQP NLAPEINALA SLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026659955.10.0transcription factor TT2-like isoform X2
TrEMBLA0A3Q0I2N80.0A0A3Q0I2N8_PHODC; transcription factor TT2-like isoform X2
STRINGXP_008787967.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-63MYB family protein