PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s709471g005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 291aa    MW: 32868 Da    PI: 6.048
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s709471g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.9e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++l++++   G  +W+++++  g+ R++k+c++rw +yl
  PDK_30s709471g005 14 KGPWTAEEDKKLINCILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                       79******************************99************97 PP

2Myb_DNA-binding48.12.6e-1570111447
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++ E++l ++++ +lG++ W++Ia++++ gRt++++k+ w+++
  PDK_30s709471g005  70 LSESEEKLVIELHSRLGNR-WSKIASHLP-GRTDNEIKNQWNTH 111
                        5899***************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-21563IPR009057Homeodomain-like
PROSITE profilePS5129413.93961IPR017930Myb domain
SuperFamilySSF466896.36E-2711108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002499.9E-151461IPR001005SANT/Myb domain
CDDcd001674.10E-91661No hitNo description
PROSITE profilePS5129424.49962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2464116IPR009057Homeodomain-like
SMARTSM007174.1E-1566114IPR001005SANT/Myb domain
PfamPF002493.2E-1470111IPR001005SANT/Myb domain
CDDcd001671.47E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDKKLINCIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SESEEKLVIE LHSRLGNRWS KIASHLPGRT DNEIKNQWNT HIKKKLRKMG  120
IDPISHKPIS STDEHHQKEE QQQEQPGAAA GEDGRSESIS LQCPQGQEEE KSITSSFDFI  180
ETDHPFLQDS PSFCTDEVPM IQPHEIILSG ASTTISFPST CTPSSGYSSS SSLKAEEIQF  240
PCMERPELTY LCGMDDFSQI WDSICSDGDG TLALDPLNHY QRKAWDRESW N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802445.10.0transcription factor MYB20-like
SwissprotQ9C7U72e-86MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A2H3YQT40.0A0A2H3YQT4_PHODC; transcription factor MYB20-like
STRINGXP_008802445.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.15e-88myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]