PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s708531g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 266aa MW: 30193.8 Da PI: 6.0788

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s708531g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.3	1.2e-52	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF P+deel+++yL kkv+++++++ ++ evd++++ePw+Lp +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+++ PDK_30s708531g003 10 LPPGFRFYPSDEELICHYLYKKVTNERISE-GTLVEVDLHTHEPWELPDVAKLSANEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRTI 100 79***********************999.88***********87788999********************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ ++++vg++ktLvfy+grap+g+kt Wvmhe+rle PDK_30s708531g003 101 HEPsTRATVGMRKTLVFYQGRAPNGVKTGWVMHEFRLE 138 9867788**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-60	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.162	10	156	IPR003441	NAC domain
Pfam	PF02365	2.8E-28	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MGLRDIESTL PPGFRFYPSD EELICHYLYK KVTNERISEG TLVEVDLHTH EPWELPDVAK 60 LSANEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDRTI HEPSTRATVG MRKTLVFYQG 120 RAPNGVKTGW VMHEFRLETP KSPPKEDWVL CRVLHKSKGE TQQDNNIGFF SCPTSGPSSS 180 LVDQPMPDGC YDPTSSSLVP HQDDSSSNPL LNLALLHCDF LDHFPHEVGM SSRGGDEHGF 240 FLDMGFDQDH DMREAGMANL EGKVWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-50	1	156	4	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-50	1	156	4	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-50	1	156	4	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-50	1	156	4	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-50	1	157	7	169	NAC domain-containing protein 19
3swm_B	5e-50	1	157	7	169	NAC domain-containing protein 19
3swm_C	5e-50	1	157	7	169	NAC domain-containing protein 19
3swm_D	5e-50	1	157	7	169	NAC domain-containing protein 19
3swp_A	5e-50	1	157	7	169	NAC domain-containing protein 19
3swp_B	5e-50	1	157	7	169	NAC domain-containing protein 19
3swp_C	5e-50	1	157	7	169	NAC domain-containing protein 19
3swp_D	5e-50	1	157	7	169	NAC domain-containing protein 19
4dul_A	5e-50	1	156	4	165	NAC domain-containing protein 19
4dul_B	5e-50	1	156	4	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008785238.1	0.0	NAC domain-containing protein 21/22-like
Swissprot	Q84TE6	2e-60	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A2H3XKQ6	0.0	A0A2H3XKQ6_PHODC; NAC domain-containing protein 21/22-like
STRING	XP_008785238.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	2e-81	NAC domain containing protein 74

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]