PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s707661g009
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 235aa    MW: 27339.7 Da    PI: 9.3948
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s707661g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-18449147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ede+l+++v q+G+++W++Ia++++ gR++k+c++rw++ 
  PDK_30s707661g009  4 RGHWRPAEDEKLKELVGQYGPHNWNAIAKKLQ-GRSGKSCRLRWLNQ 49
                       899*****************************.***********996 PP
2Myb_DNA-binding53.26.6e-175699146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       r ++T+eE+e+l+  ++ lG++ W+ Iar ++ gRt++ +k++w+ 
  PDK_30s707661g009 56 RSPFTPEEEERLLASHRILGNR-WAIIARLFP-GRTDNAVKNHWHV 99
                       789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.022154IPR017930Myb domain
SMARTSM007172.6E-15352IPR001005SANT/Myb domain
PfamPF002493.5E-17449IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-29497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-27557IPR009057Homeodomain-like
CDDcd001673.94E-13748No hitNo description
PROSITE profilePS5129420.57755105IPR017930Myb domain
SMARTSM007172.6E-1455103IPR001005SANT/Myb domain
PfamPF002491.3E-135698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2058104IPR009057Homeodomain-like
CDDcd001675.67E-105898No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MCSRGHWRPA EDEKLKELVG QYGPHNWNAI AKKLQGRSGK SCRLRWLNQL DPRINRSPFT  60
PEEEERLLAS HRILGNRWAI IARLFPGRTD NAVKNHWHVI MARRCRERSR LYSKRAYRTA  120
VKDEKSKQNK ERKSESRNIV ILVEKHCRGY SSSIATNHQK HKEFYSEIHG YYPSMVADGD  180
RHGENSIEFY DFLQVNTDSN DTRCCSSIVE QEETKENCSE AVVPFIDFLA VGSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3341057108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008787882.11e-177transcription factor MYB54-like isoform X2
SwissprotQ6R0C42e-79MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A2H3XSC21e-176A0A2H3XSC2_PHODC; transcription factor MYB54-like isoform X2
STRINGXP_008787882.11e-177(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.17e-82myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]