PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s707401g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | GATA | ||||||||
Protein Properties | Length: 138aa MW: 15119.3 Da PI: 11.0272 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.4 | 2.7e-20 | 20 | 54 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++ PDK_30s707401g001 20 CADCRTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 54 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.4E-18 | 14 | 65 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.178 | 14 | 50 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.23E-14 | 14 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-16 | 18 | 54 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.73E-13 | 19 | 54 | No hit | No description |
Pfam | PF00320 | 5.0E-18 | 20 | 54 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 20 | 45 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
ETGSIDLSGG REGSGEPKSC ADCRTTKTPL WRGGPSGPKS LCNACGIRYR KKRRAVLGHK 60 EGERRERKQK REDDSSSSTT TTTTKELGGV SVKLRMLGLG SEVLVKRRSM LDRKRRRMGE 120 VEQAAVLLMA LSSGFLHA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 116 | RKRRR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008797161.1 | 1e-93 | GATA transcription factor 15-like | ||||
TrEMBL | A0A2H3YDU7 | 3e-92 | A0A2H3YDU7_PHODC; GATA transcription factor 15-like | ||||
STRING | XP_008797161.1 | 4e-93 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2418 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 5e-29 | GATA transcription factor 15 |