PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s702781g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 518aa    MW: 58188.8 Da    PI: 6.2667
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s702781g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-121454445
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                       W ++E+ ll+++++++G g+W+ +a+++g +++  qc++++ 
  PDK_30s702781g003 14 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKAQCIDHYT 54
                       *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-12760IPR009057Homeodomain-like
PROSITE profilePS5129322.48961IPR017884SANT domain
SMARTSM007174.6E-111059IPR001005SANT/Myb domain
PfamPF002494.1E-121354IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-81456IPR009057Homeodomain-like
CDDcd001679.49E-121455No hitNo description
SuperFamilySSF466891.43E-19429507IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MADNLSFPLI CPDWNADEEI LLLEGIEMYG LGNWAEVAEH VGTKSKAQCI DHYTTAYMNS  60
PCYPLPDMSR VNGKNRKELL AMAKMQGEGK KGVSVLGDVT PKEESPFSPS RVKIEDVSGE  120
AAAGRSPSLA SGASKKASST GQLKDGSDGT KLEDPHVDRS VGVKKPKYTG DEGPSMTELS  180
GFNPKRQEFD PEYDNDAEQA LAEMEFKETD TETDRELKLR VLRIYLSSVL SHGSVENCFS  240
SHQHYVCYFK ISALSVYVCE NIFLFVFLDR LDERKRRKDF ILERNLLYPN PLEKELSSED  300
REIYNRYKVF MRFLSPEDHE ALVKSVIEER KIRRRIQELQ ECRAAGCRSL AEAKAYIEQK  360
RKRELEASAQ KAKESKEGNQ VVASSKVMQK AARPMNREKG ESDGSPRNTI DNHKIKGGAG  420
LDSGSKDSPS TTFDDWDITG LPGAELLSEH ERQLCCQNRL LPSHYLKMQQ KLVEEIFKGT  480
VVKKSDAHGL FKVDPVKVDT VYDIVIKKLG QHDESAAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C4e-1866957120Transcriptional adapter 2
6cw3_E4e-1866957120Transcriptional adapter 2
6cw3_G4e-1866957120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273278RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008780988.10.0transcriptional adapter ADA2-like isoform X1
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2H3XAN20.0A0A2H3XAN2_PHODC; Transcriptional adapter
STRINGXP_008780988.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]