PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s701911g006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | HB-other | ||||||||
Protein Properties | Length: 251aa MW: 26895.8 Da PI: 7.6579 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 7e-18 | 32 | 86 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ +++qle Le+ ++ + yps++ r+eL+ k+gL++rq ++WF+ rR k++k PDK_30s701911g006 32 KRQMKSPYQLELLEKTYAVETYPSEALRAELSVKTGLSDRQLQMWFCHRRLKDRK 86 8999*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-16 | 15 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.04E-16 | 25 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.03 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-14 | 29 | 91 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-15 | 32 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.74E-16 | 32 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEIGEGGEGK PPPEGLKKPA STPEGGEAKP PKRQMKSPYQ LELLEKTYAV ETYPSEALRA 60 ELSVKTGLSD RQLQMWFCHR RLKDRKFPPA KRQRKEEEPA AAAGGDVMMV SGAAPVGSSS 120 NPFAGGFGSG GETRKAVSRA AAAVSRIGAE TSSAGKRYYE PPPGLLLQHT PPAQPLPLSM 180 AELRVIASVE AQLGEPLRED GPILGVEFDP LPPGAFGAPI GTHMVILTIM IAYTIHEALY 240 WATIFRGFYG D |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008811887.1 | 1e-143 | homeobox-DDT domain protein RLT2-like isoform X1 | ||||
Refseq | XP_008811888.1 | 1e-144 | homeobox-DDT domain protein RLT2-like isoform X2 | ||||
Swissprot | Q9FFH1 | 2e-44 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A2H3ZCT0 | 1e-142 | A0A2H3ZCT0_PHODC; homeobox-DDT domain protein RLT2-like isoform X2 | ||||
TrEMBL | A0A2H3ZDL3 | 1e-142 | A0A2H3ZDL3_PHODC; homeobox-DDT domain protein RLT2-like isoform X1 | ||||
STRING | XP_008811887.1 | 1e-143 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16740 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 2e-44 | Homeodomain-like transcriptional regulator |