PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s701601g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 28634 Da PI: 8.9801 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.1e-16 | 44 | 89 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++Ia+++ gR++k+c++rw++ PDK_30s701601g001 44 RGHWRPGEDAKLKELVSQFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 89 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.4 | 3.3e-18 | 96 | 139 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ PDK_30s701601g001 96 RRVFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 139 5679******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.743 | 39 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-13 | 43 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 44 | 89 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.65E-27 | 44 | 137 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 45 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.54E-12 | 47 | 88 | No hit | No description |
PROSITE profile | PS51294 | 26.838 | 91 | 145 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 95 | 143 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 97 | 138 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 98 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-7 | 107 | 138 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MVKEQHKDCG FSGEQVLYHG DEKEQSGQGE GGTHENGQTK LCARGHWRPG EDAKLKELVS 60 QFGPQNWNLI AEKLEGRSGK SCRLRWFNQL DPRINRRVFS EEEEERLLAA HRLYGNKWAL 120 IARLFPGRTD NAVKNHWHVI MARKHREKSS SYRRRKSSTS SPNPPSSQAL TNRIEVNTSN 180 IACSGESTIT ATRDESASTC TDLSLNSFTS VTIPNLLYSY SSPQQPRPFE FLMGHEREKI 240 SLPFIDFLGV GAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-32 | 42 | 144 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008793340.1 | 1e-154 | transcription factor CSA-like | ||||
Refseq | XP_008793341.1 | 1e-154 | transcription factor CSA-like | ||||
Swissprot | Q5NBM8 | 1e-76 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A2H3Y4J9 | 1e-152 | A0A2H3Y4J9_PHODC; transcription factor CSA-like | ||||
STRING | XP_008793340.1 | 1e-153 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17800.1 | 9e-63 | myb domain protein 56 |