PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s701551g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 972aa MW: 110856 Da PI: 8.3247

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s701551g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.2	4.3e-26	356	447	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF+vr+++ ++s+r+++i++r+fvC keg+ +++k+ + kerr+ra+ r gCka+l+v ++++++w vtkl eHnH+++ PDK_30s701551g002 356 KFYFDYAEHVGFRVRNNRFRTSRRDDSIIMRRFVCCKEGFYLKNEKRknDGKERRKRASIREGCKAMLEVVRKDKDRWAVTKLIIEHNHAFV 447 6************************************96555544347999**********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-24	356	447	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-25	540	633	IPR018289	MULE transposase domain
Pfam	PF04434	2.5E-10	811	859	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.313	824	860	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-4	835	862	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MSPPSLTPTP PFAGVATPSN DPTPHFETFD VGVGSLEWDD KEAAGDIGVG GVGSGVWPKT 60 GVVGGGRRSL GWCTAVKLWG RPHIYFMRVY FRRNFMRSFL CVTSFYGSIY DNFLIYMLCG 120 FTSAQNVYAF FCMRVGVRGD ERLQVFPWER RGLSRVLLLS QRRGFGAPAS GVGFVVISVT 180 RFPIRLGELK NSVLGPRFEP FLVVEYGDFR HRDKTATVDE RRFLMWLLGL MHENPHIIGV 240 SLEVLGNSGK KHDIRLKSSR IYRFRVGAAL GLDFNPESIE VDAGDSVLLE DNVGEKEEEE 300 EEEEGDVENP VVEMSCQFMG TEFPFDGGVQ GKLELQMEPS EPYVGMEFDS LESARKFYFD 360 YAEHVGFRVR NNRFRTSRRD DSIIMRRFVC CKEGFYLKNE KRKNDGKERR KRASIREGCK 420 AMLEVVRKDK DRWAVTKLII EHNHAFVVNI RASKPKKKRA PLAFPVEMSS LFGEGFGAEE 480 RQNAVWGGGE AFSLLQYFRK MQTKNPAFFY SIEVDETNKL KNVFWANAKA RMAYSYFGDV 540 VALDTTYKKN KLMMPFVLFT GVNRHLQPVV FGCSVLLDET ETSYIWLFET FLVAMSGRLP 600 VSFVTDHCKV LAAAVMKVFH GTHHRFCKWR ILSKCKEKLP DICSTQAARA SLKEDMKKCI 660 DETDTVQDFE SLWEAFLLKY NLTENEWIQS LYEVRQQWAT VYLKDKFFAE MSPTQRSESM 720 NKFFQRNFET KTSLFEFVAK FDQAIAGQYE KEVQADFANM ITRPVLKTSS LLEKQASETY 780 TKTIFAIFQE ELVQALGYSV EKFQDGSVCR YHVALNAEGA RMTYDVTFDS SETRARCSCQ 840 KFEFSGIICR HILRAFQAVG LCKLPEGLIL KRWTQNAKSG TVLYENCANI QGNAQNIFTQ 900 RCNDLFLDVL KHAAEGATSL VTYKAAKDAL QKAFDEVVSA KKSLWSTKPG IVCLIFYLVF 960 LVLSKNLDQF CG

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MSPPSLTPTP PFAGVATPSN DPTPHFETFD VGVGSLEWDD KEAAGDIGVG GVGSGVWPKT  60
GVVGGGRRSL GWCTAVKLWG RPHIYFMRVY FRRNFMRSFL CVTSFYGSIY DNFLIYMLCG  120
FTSAQNVYAF FCMRVGVRGD ERLQVFPWER RGLSRVLLLS QRRGFGAPAS GVGFVVISVT  180
RFPIRLGELK NSVLGPRFEP FLVVEYGDFR HRDKTATVDE RRFLMWLLGL MHENPHIIGV  240
SLEVLGNSGK KHDIRLKSSR IYRFRVGAAL GLDFNPESIE VDAGDSVLLE DNVGEKEEEE  300
EEEEGDVENP VVEMSCQFMG TEFPFDGGVQ GKLELQMEPS EPYVGMEFDS LESARKFYFD  360
YAEHVGFRVR NNRFRTSRRD DSIIMRRFVC CKEGFYLKNE KRKNDGKERR KRASIREGCK  420
AMLEVVRKDK DRWAVTKLII EHNHAFVVNI RASKPKKKRA PLAFPVEMSS LFGEGFGAEE  480
RQNAVWGGGE AFSLLQYFRK MQTKNPAFFY SIEVDETNKL KNVFWANAKA RMAYSYFGDV  540
VALDTTYKKN KLMMPFVLFT GVNRHLQPVV FGCSVLLDET ETSYIWLFET FLVAMSGRLP  600
VSFVTDHCKV LAAAVMKVFH GTHHRFCKWR ILSKCKEKLP DICSTQAARA SLKEDMKKCI  660
DETDTVQDFE SLWEAFLLKY NLTENEWIQS LYEVRQQWAT VYLKDKFFAE MSPTQRSESM  720
NKFFQRNFET KTSLFEFVAK FDQAIAGQYE KEVQADFANM ITRPVLKTSS LLEKQASETY  780
TKTIFAIFQE ELVQALGYSV EKFQDGSVCR YHVALNAEGA RMTYDVTFDS SETRARCSCQ  840
KFEFSGIICR HILRAFQAVG LCKLPEGLIL KRWTQNAKSG TVLYENCANI QGNAQNIFTQ  900
RCNDLFLDVL KHAAEGATSL VTYKAAKDAL QKAFDEVVSA KKSLWSTKPG IVCLIFYLVF  960
LVLSKNLDQF CG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010930350.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1D1XZB5	0.0	A0A1D1XZB5_9ARAE; Protein FAR1-RELATED SEQUENCE 5
STRING	XP_008785327.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-155	FAR1-related sequence 5