PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s700322g007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 140aa MW: 16480.9 Da PI: 10.1983 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152.7 | 1.7e-47 | 5 | 122 | 11 | 129 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 +ee++++yL +kv + ++++ +++ evd++k+ePwdLp+k+k +ekewyfF+++d+ky+tg+r nrat+ gyWkatgkdke+++ kg lvg+ PDK_30s700322g007 5 NEEIITHYLSAKVMNPSFSA-RAMGEVDLNKCEPWDLPSKAKMGEKEWYFFCQKDRKYPTGTRINRATEYGYWKATGKDKEIYRGKGILVGM 95 69****************99.89***************99999************************************************* PP NAM 103 kktLvfykgrapkgektdWvmheyrle 129 kktLvfy+grapkgekt+Wv+he+rle PDK_30s700322g007 96 KKTLVFYRGRAPKGEKTNWVIHEFRLE 122 ************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.777 | 1 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-20 | 5 | 121 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-48 | 6 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MGVYNEEIIT HYLSAKVMNP SFSARAMGEV DLNKCEPWDL PSKAKMGEKE WYFFCQKDRK 60 YPTGTRINRA TEYGYWKATG KDKEIYRGKG ILVGMKKTLV FYRGRAPKGE KTNWVIHEFR 120 LEGRTQYHNH HRTPRVPSFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-41 | 5 | 121 | 27 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-41 | 5 | 121 | 27 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-41 | 5 | 121 | 27 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-41 | 5 | 121 | 27 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
3swm_B | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
3swm_C | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
3swm_D | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
3swp_A | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
3swp_B | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
3swp_C | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
3swp_D | 5e-41 | 5 | 121 | 30 | 145 | NAC domain-containing protein 19 |
4dul_A | 5e-41 | 5 | 121 | 27 | 142 | NAC domain-containing protein 19 |
4dul_B | 5e-41 | 5 | 121 | 27 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792523.1 | 1e-93 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FK44 | 2e-70 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A2H3Y2Q5 | 3e-92 | A0A2H3Y2Q5_PHODC; NAC domain-containing protein 100-like | ||||
STRING | XP_008792523.1 | 5e-93 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 6e-74 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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