PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s697761g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NF-YC | ||||||||
Protein Properties | Length: 236aa MW: 27188.8 Da PI: 5.0613 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 164.7 | 1.2e-51 | 72 | 174 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 l++fw++q i +tdfknh+lPlarikki+kadedv+mi+aeaP+l+++ace+filelt rsw ++eenkrrtl+k+diaaa+trtdifd PDK_30s697761g001 72 LQMFWASQyqeIRATTDFKNHSLPLARIKKIMKADEDVRMIAAEAPMLFARACEMFILELTYRSWAQTEENKRRTLHKNDIAAAITRTDIFD 163 89****998778899***************************************************************************** PP NF-YC 91 flvdivprdel 101 flvdivpr++l PDK_30s697761g001 164 FLVDIVPREDL 174 ********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.07E-30 | 69 | 165 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-20 | 93 | 156 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.5E-36 | 94 | 171 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDDPGQGQPP VMDAVHIPYL AMPYQANQMM GSTVPISSSQ LTTAASQVQL AQHQLSYQQI 60 HQQQMQQLDQ TLQMFWASQY QEIRATTDFK NHSLPLARIK KIMKADEDVR MIAAEAPMLF 120 ARACEMFILE LTYRSWAQTE ENKRRTLHKN DIAAAITRTD IFDFLVDIVP REDLKEEMNA 180 NDSLSYYYVS AQVRSLGMIM NKPEVDHGLL YAQLPQSYMP QQHQPQHQEQ QPSEDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-56 | 78 | 171 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017701213.2 | 1e-176 | nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q9ZVL3 | 5e-65 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A2H3ZYK8 | 1e-174 | A0A2H3ZYK8_PHODC; nuclear transcription factor Y subunit C-3-like | ||||
STRING | XP_008806484.1 | 1e-175 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 6e-64 | nuclear factor Y, subunit C3 |