PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s696611g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 528aa    MW: 58951.4 Da    PI: 7.8265
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s696611g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.31.1e-12111135226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C+++++tG C++G++CkF+H+
  PDK_30s696611g001 111 DEPDCMYYLKTGSCRFGSSCKFNHP 135
                        6899********************8 PP
2zf-CCCH29.71.1e-09403428126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++++C++++r+G Ck+  +Ck++H+
  PDK_30s696611g001 403 PGERECPYYMRNGSCKFATNCKYHHP 428
                        5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.375109137IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5109136IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10111135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6112137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5115135IPR000571Zinc finger, CCCH-type
SMARTSM003568.5361384IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.592365385IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5402429IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596402430IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6404428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5405429IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MVVSEAEVVP KAEELGLGLA PAPSSSSCPP DSSVEALTGE LASLKLEKKS AEGDGDQDST  60
GAGDQEEITG AGDQEEITGD ENDGVLEKDS GSPGKEKDWK RERFRYPQRP DEPDCMYYLK  120
TGSCRFGSSC KFNHPARRKR NQVKSKKPFE ANQAIKEEQK EPIPKVGQTE SKVDKKEKEA  180
VDEMQNGTLS ERVEPKESKF VEKREGSPSK MVDQTERKFV EKREGSPSKM VDQTERKKMC  240
RYEPGTTQCG PMLARPASQP VRCPIPVPLS LIAGATEEKG KETLSERGGQ TECKNDFYLK  300
QGMPYHIEPS GTEHTDFVPV LTAKRLRGSL PTIRFNAYKS VEIQKIIHVH SKSLLLYHIS  360
ANVEYYSMPG GCKFGKACKY VHHRGKHENN SVQLNFLGLP IRPGERECPY YMRNGSCKFA  420
TNCKYHHPDP TAVGGQDPRS GHRNSEPPQQ RGLGAPQVPM TWPVQTMSNE PVSFLNASPS  480
YVPGMILPPQ RLHSNLEWNG YQVINHFTFP KNYLSLNNIC HFALNHDV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796045.11e-128zinc finger CCCH domain-containing protein 65 isoform X2
SwissprotQ2QTY24e-43C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A2H3YAT51e-126A0A2H3YAT5_PHODC; zinc finger CCCH domain-containing protein 65 isoform X2
STRINGXP_008796043.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.16e-28C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]